A comparative, BAC end sequence enabled map of the genome of the American mink (Neovison vison)

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Standard

A comparative, BAC end sequence enabled map of the genome of the American mink (Neovison vison). / Benkel, Bernhard F.; Smith, Amanda; Christensen, Knud; Anistoroaei, Razvan Marian; Zhang, Ye; Sensen, Christoph W.; Farid, Hossain; Paterson, Lyn; Teather, Ronald M.

I: Genes and Genomics, Bind 34, Nr. 1, 2012, s. 83-91.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Harvard

Benkel, BF, Smith, A, Christensen, K, Anistoroaei, RM, Zhang, Y, Sensen, CW, Farid, H, Paterson, L & Teather, RM 2012, 'A comparative, BAC end sequence enabled map of the genome of the American mink (Neovison vison)', Genes and Genomics, bind 34, nr. 1, s. 83-91. https://doi.org/10.1007/s13258-011-0160-8

APA

Benkel, B. F., Smith, A., Christensen, K., Anistoroaei, R. M., Zhang, Y., Sensen, C. W., Farid, H., Paterson, L., & Teather, R. M. (2012). A comparative, BAC end sequence enabled map of the genome of the American mink (Neovison vison). Genes and Genomics, 34(1), 83-91. https://doi.org/10.1007/s13258-011-0160-8

Vancouver

Benkel BF, Smith A, Christensen K, Anistoroaei RM, Zhang Y, Sensen CW o.a. A comparative, BAC end sequence enabled map of the genome of the American mink (Neovison vison). Genes and Genomics. 2012;34(1):83-91. https://doi.org/10.1007/s13258-011-0160-8

Author

Benkel, Bernhard F. ; Smith, Amanda ; Christensen, Knud ; Anistoroaei, Razvan Marian ; Zhang, Ye ; Sensen, Christoph W. ; Farid, Hossain ; Paterson, Lyn ; Teather, Ronald M. / A comparative, BAC end sequence enabled map of the genome of the American mink (Neovison vison). I: Genes and Genomics. 2012 ; Bind 34, Nr. 1. s. 83-91.

Bibtex

@article{c9a175de6264492eb112aa79123c38f6,
title = "A comparative, BAC end sequence enabled map of the genome of the American mink (Neovison vison)",
abstract = "In this report we present the results of the analysis of approximately 2.7 Mb of genomic information for the American mink (Neovison vison) derived through BAC end sequencing. Our study, which encompasses approximately 1/1000th of the mink genome, suggests that simple sequence repeats (SSRs) are less common in the mink than in the human genome, whereas the average GC content of the mink genome is slightly higher than that of its human counterpart. The 2.7 Mb mink genomic dataset also contained 2,416 repeat elements (retroids and DNA transposons) occupying almost 31% of the sequence space. Among repeat elements, LINEs were over-represented and endogenous viruses (aka LTRs) under-represented in comparison to the human genome. Finally, we present a virtual map of the mink genome constructed with reference to the human and canine genome assemblies using a comparative genomics approach and incorporating over 200 mink BESs with unique hits to the human genome. ",
keywords = "Former LIFE faculty, American mink, BAC end sequencing, Comparatve mapping, Structural genomics",
author = "Benkel, {Bernhard F.} and Amanda Smith and Knud Christensen and Anistoroaei, {Razvan Marian} and Ye Zhang and Sensen, {Christoph W.} and Hossain Farid and Lyn Paterson and Teather, {Ronald M.}",
year = "2012",
doi = "10.1007/s13258-011-0160-8",
language = "English",
volume = "34",
pages = "83--91",
journal = "Genes and Genomics",
issn = "1976-9571",
publisher = "Genetics Society of Korea",
number = "1",

}

RIS

TY - JOUR

T1 - A comparative, BAC end sequence enabled map of the genome of the American mink (Neovison vison)

AU - Benkel, Bernhard F.

AU - Smith, Amanda

AU - Christensen, Knud

AU - Anistoroaei, Razvan Marian

AU - Zhang, Ye

AU - Sensen, Christoph W.

AU - Farid, Hossain

AU - Paterson, Lyn

AU - Teather, Ronald M.

PY - 2012

Y1 - 2012

N2 - In this report we present the results of the analysis of approximately 2.7 Mb of genomic information for the American mink (Neovison vison) derived through BAC end sequencing. Our study, which encompasses approximately 1/1000th of the mink genome, suggests that simple sequence repeats (SSRs) are less common in the mink than in the human genome, whereas the average GC content of the mink genome is slightly higher than that of its human counterpart. The 2.7 Mb mink genomic dataset also contained 2,416 repeat elements (retroids and DNA transposons) occupying almost 31% of the sequence space. Among repeat elements, LINEs were over-represented and endogenous viruses (aka LTRs) under-represented in comparison to the human genome. Finally, we present a virtual map of the mink genome constructed with reference to the human and canine genome assemblies using a comparative genomics approach and incorporating over 200 mink BESs with unique hits to the human genome.

AB - In this report we present the results of the analysis of approximately 2.7 Mb of genomic information for the American mink (Neovison vison) derived through BAC end sequencing. Our study, which encompasses approximately 1/1000th of the mink genome, suggests that simple sequence repeats (SSRs) are less common in the mink than in the human genome, whereas the average GC content of the mink genome is slightly higher than that of its human counterpart. The 2.7 Mb mink genomic dataset also contained 2,416 repeat elements (retroids and DNA transposons) occupying almost 31% of the sequence space. Among repeat elements, LINEs were over-represented and endogenous viruses (aka LTRs) under-represented in comparison to the human genome. Finally, we present a virtual map of the mink genome constructed with reference to the human and canine genome assemblies using a comparative genomics approach and incorporating over 200 mink BESs with unique hits to the human genome.

KW - Former LIFE faculty

KW - American mink

KW - BAC end sequencing

KW - Comparatve mapping

KW - Structural genomics

U2 - 10.1007/s13258-011-0160-8

DO - 10.1007/s13258-011-0160-8

M3 - Journal article

VL - 34

SP - 83

EP - 91

JO - Genes and Genomics

JF - Genes and Genomics

SN - 1976-9571

IS - 1

ER -

ID: 37765863