A re-assigned American mink (Neovison vison) map optimal for genome-wide studies

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Standard

A re-assigned American mink (Neovison vison) map optimal for genome-wide studies. / Anistoroaei, Razvan Marian; Nielsen, Vivi Hunnicke; Markakis, Marios Nektarios; Karlskov-Mortensen, Peter; Jørgensen, Claus Bøttcher; Christensen, Knud; Fredholm, Merete.

I: Gene, Bind 511, Nr. 1, 2012, s. 66-72.

Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

Harvard

Anistoroaei, RM, Nielsen, VH, Markakis, MN, Karlskov-Mortensen, P, Jørgensen, CB, Christensen, K & Fredholm, M 2012, 'A re-assigned American mink (Neovison vison) map optimal for genome-wide studies', Gene, bind 511, nr. 1, s. 66-72. https://doi.org/10.1016/j.gene.2012.08.033

APA

Anistoroaei, R. M., Nielsen, V. H., Markakis, M. N., Karlskov-Mortensen, P., Jørgensen, C. B., Christensen, K., & Fredholm, M. (2012). A re-assigned American mink (Neovison vison) map optimal for genome-wide studies. Gene, 511(1), 66-72. https://doi.org/10.1016/j.gene.2012.08.033

Vancouver

Anistoroaei RM, Nielsen VH, Markakis MN, Karlskov-Mortensen P, Jørgensen CB, Christensen K o.a. A re-assigned American mink (Neovison vison) map optimal for genome-wide studies. Gene. 2012;511(1):66-72. https://doi.org/10.1016/j.gene.2012.08.033

Author

Anistoroaei, Razvan Marian ; Nielsen, Vivi Hunnicke ; Markakis, Marios Nektarios ; Karlskov-Mortensen, Peter ; Jørgensen, Claus Bøttcher ; Christensen, Knud ; Fredholm, Merete. / A re-assigned American mink (Neovison vison) map optimal for genome-wide studies. I: Gene. 2012 ; Bind 511, Nr. 1. s. 66-72.

Bibtex

@article{357dfa7976bd453690f1446bde2b8f0d,
title = "A re-assigned American mink (Neovison vison) map optimal for genome-wide studies",
abstract = "Our previously published second generation genetic map for the American mink (Neovison vison) has been used and redesigned in its best for genome-wide studies with maximum of efficiency. A number of 114 selected markers, including 33 newly developed microsatellite markers from the CHORI-231 mink Bacterial Artificial Chromosome (BAC) library, have been genotyped in a two generation population composed of 1200 individuals. The outcome reassigns the position of some markers on the chromosomes and it produces a more reliable map with a convenient distance between markers. A total of 104 markers mapped to 14 linkage groups corresponding to the mink autosomes. Six markers are unlinked and four markers are allocated to the X chromosome by homology but no linkage was detected. The sex-average linkage map spans 1192 centiMorgans (cM) with an average intermarker distance of 11.4cM and 1648cM when the ends of the linkage groups and the autosomal unlinked markers are added. Sex-specific genetic linkage maps were also generated. The male sex-specific map had a total length of 1014.6cM between the linked markers and an average inter-marker interval of 9.7cM. The female map has a corresponding length of 1378.6cM and an average inter-marker interval of 13.3cM. The study is complemented with additional anchorage for most of the chromosomes of the map by BAC in situ hybridization with clones containing microsatellites strategically selected from the various parts of the genome. This map provides an improved tool for genetic mapping and comparative genomics in mink, also useful for the future assembly of the mink genome sequence when this will be taken forward.",
keywords = "Former LIFE faculty, American mink, Genetic map, Sex-specific map, Homology",
author = "Anistoroaei, {Razvan Marian} and Nielsen, {Vivi Hunnicke} and Markakis, {Marios Nektarios} and Peter Karlskov-Mortensen and J{\o}rgensen, {Claus B{\o}ttcher} and Knud Christensen and Merete Fredholm",
year = "2012",
doi = "10.1016/j.gene.2012.08.033",
language = "English",
volume = "511",
pages = "66--72",
journal = "Gene",
issn = "0378-1119",
publisher = "Elsevier",
number = "1",

}

RIS

TY - JOUR

T1 - A re-assigned American mink (Neovison vison) map optimal for genome-wide studies

AU - Anistoroaei, Razvan Marian

AU - Nielsen, Vivi Hunnicke

AU - Markakis, Marios Nektarios

AU - Karlskov-Mortensen, Peter

AU - Jørgensen, Claus Bøttcher

AU - Christensen, Knud

AU - Fredholm, Merete

PY - 2012

Y1 - 2012

N2 - Our previously published second generation genetic map for the American mink (Neovison vison) has been used and redesigned in its best for genome-wide studies with maximum of efficiency. A number of 114 selected markers, including 33 newly developed microsatellite markers from the CHORI-231 mink Bacterial Artificial Chromosome (BAC) library, have been genotyped in a two generation population composed of 1200 individuals. The outcome reassigns the position of some markers on the chromosomes and it produces a more reliable map with a convenient distance between markers. A total of 104 markers mapped to 14 linkage groups corresponding to the mink autosomes. Six markers are unlinked and four markers are allocated to the X chromosome by homology but no linkage was detected. The sex-average linkage map spans 1192 centiMorgans (cM) with an average intermarker distance of 11.4cM and 1648cM when the ends of the linkage groups and the autosomal unlinked markers are added. Sex-specific genetic linkage maps were also generated. The male sex-specific map had a total length of 1014.6cM between the linked markers and an average inter-marker interval of 9.7cM. The female map has a corresponding length of 1378.6cM and an average inter-marker interval of 13.3cM. The study is complemented with additional anchorage for most of the chromosomes of the map by BAC in situ hybridization with clones containing microsatellites strategically selected from the various parts of the genome. This map provides an improved tool for genetic mapping and comparative genomics in mink, also useful for the future assembly of the mink genome sequence when this will be taken forward.

AB - Our previously published second generation genetic map for the American mink (Neovison vison) has been used and redesigned in its best for genome-wide studies with maximum of efficiency. A number of 114 selected markers, including 33 newly developed microsatellite markers from the CHORI-231 mink Bacterial Artificial Chromosome (BAC) library, have been genotyped in a two generation population composed of 1200 individuals. The outcome reassigns the position of some markers on the chromosomes and it produces a more reliable map with a convenient distance between markers. A total of 104 markers mapped to 14 linkage groups corresponding to the mink autosomes. Six markers are unlinked and four markers are allocated to the X chromosome by homology but no linkage was detected. The sex-average linkage map spans 1192 centiMorgans (cM) with an average intermarker distance of 11.4cM and 1648cM when the ends of the linkage groups and the autosomal unlinked markers are added. Sex-specific genetic linkage maps were also generated. The male sex-specific map had a total length of 1014.6cM between the linked markers and an average inter-marker interval of 9.7cM. The female map has a corresponding length of 1378.6cM and an average inter-marker interval of 13.3cM. The study is complemented with additional anchorage for most of the chromosomes of the map by BAC in situ hybridization with clones containing microsatellites strategically selected from the various parts of the genome. This map provides an improved tool for genetic mapping and comparative genomics in mink, also useful for the future assembly of the mink genome sequence when this will be taken forward.

KW - Former LIFE faculty

KW - American mink

KW - Genetic map

KW - Sex-specific map

KW - Homology

U2 - 10.1016/j.gene.2012.08.033

DO - 10.1016/j.gene.2012.08.033

M3 - Journal article

C2 - 22982743

VL - 511

SP - 66

EP - 72

JO - Gene

JF - Gene

SN - 0378-1119

IS - 1

ER -

ID: 44559437