Ernst Stefan Seemann
Associate Professor
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Prediction of structured non-coding RNAs, RNA-RNA interactions and their (co)-expression in the brain
Seemann, Ernst Stefan, 2010, Department of Basic Animal and Veterinary Sciences, University of Copenhagen. 195 p.Research output: Book/Report › Ph.D. thesis › Research
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Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain
Seemann, Ernst Stefan, Sunkin, S. M., Hawrylycz, M. J., Ruzzo, W. L. & Gorodkin, Jan, 2012, In: BMC Genomics. 13, 1, p. 214-227 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The identification and functional annotation of RNA structures conserved in vertebrates
Seemann, Ernst Stefan, Mirza, A. H., Hansen, C., Bang-Berthelsen, C. H., Garde, C., Christensen-Dalsgaard, M., Torarinsson, E., Yao, Z., Workman, C. T., Pociot, Flemming, Nielsen, Henrik, Tommerup, Niels, Ruzzo, W. L. & Gorodkin, Jan, 2017, In: Genome Research. 27, p. 1371-1383 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Quality Assessment of Domesticated Animal Genome Assemblies
Seemann, Ernst Stefan, Anthon, Christian, Palasca, Oana & Gorodkin, Jan, 2015, In: Bioinformatics and Biology Insights. 9, Suppl 4, p. 49-58 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Does rapid sequence divergence preclude RNA structure conservation in vertebrates?
Seemann, Ernst Stefan, Mirza, A. H., Bang-Berthelsen, C. H., Garde, C., Christensen-Dalsgaard, M., Workman, C. T., Pociot, Flemming, Tommerup, Niels, Gorodkin, Jan & Ruzzo, W. L., 2022, In: Nucleic Acids Research. 50, 5, p. 2452-2463 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Modelling Nonalcoholic Steatohepatitis In Vivo—A Close Transcriptomic Similarity Supports the Guinea Pig Disease Model
Skat-Rørdam, Josephine, Ipsen, David Højland, Seemann, Ernst Stefan, Latta, M., Lykkesfeldt, Jens & Tveden-Nyborg, Pernille, 2021, In: Biomedicines. 9, 9, 18 p., 1198.Research output: Contribution to journal › Journal article › Research › peer-review
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Modelling nonalcoholic steatohepatitis in vivo—a close transcriptomic similarity supports the guinea pig disease model
Skat-Rørdam, Josephine, Ipsen, David Højland, Seemann, Ernst Stefan, Latta, M., Lykkesfeldt, Jens & Tveden-Nyborg, Pernille, Sep 2021, In: Biomedicines. 9, 9, 1198.Research output: Contribution to journal › Journal article › Research › peer-review
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DotAligner: Identification and clustering of RNA structure motifs
Smith, M. A., Seemann, Ernst Stefan, Quek, X. C. & Mattick, J. S., Dec 2017, In: Genome Biology. 18, 1, 12 p., 244.Research output: Contribution to journal › Journal article › Research › peer-review
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RNAcentral 2021: Secondary structure integration, improved sequence search and new member databases
Sweeney, B. A., Petrov, A. I., Ribas, C. E., Finn, R. D., Bateman, A., Szymanski, M., Karlowski, W. M., Seemann, S. E., Gorodkin, J., Cannone, J. J., Gutell, R. R., Kay, S., Marygold, S., Dos Santos, G., Frankish, A., Mudge, J. M., Barshir, R., Fishilevich, S., Chan, P. P., Lowe, T. M. & 26 others, , 2021, In: Nucleic Acids Research. 49, D1, p. D212-D220Research output: Contribution to journal › Journal article › Research › peer-review
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Full-length RNA structure prediction of the HIV-1 genome reveals a conserved core domain
Sükösd, Z., Andersen, E. S., Seemann, Ernst Stefan, Jensen, M. K., Hansen, M., Gorodkin, Jan & Kjems, J., 2 Dec 2015, In: Nucleic Acids Research. 43, 21, p. 10168-79 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 4223622
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1296
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Detection of RNA structures in porcine EST data and related mammals
Research output: Contribution to journal › Journal article › Research › peer-review
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880
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Structured RNAs and synteny regions in the pig genome
Research output: Contribution to journal › Journal article › Research › peer-review
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670
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Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments
Research output: Contribution to journal › Journal article › Research › peer-review
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