Ernst Stefan Seemann

Ernst Stefan Seemann

Associate Professor

Member of:

    ORCID: 0000-0002-2359-4927

    Publication year:
    All
    1 - 25 out of 52Page size: 25
    Sort by: Title
    1. Published

      SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization

      Damas, N. D., Marcatti, M., Côme, Christophe Roger Michel, Christensen, L., Nielsen, M. M., Baumgartner, R., Gylling, H. M., Maglieri, G., Friis, Carsten, Seemann, Ernst Stefan, Rapin, N., Thézenas, S., Vang, S., Ørntoft, T., Andersen, C. L., Pedersen, J. S. & Lund, Anders H., 22 Dec 2016, In: Nature Communications. 7, 14 p., 13875.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      Alteration of microglial metabolism and inflammatory profile contributes to neurotoxicity in a hiPSC-derived microglia model of frontotemporal dementia 3

      Haukedal, H., Syshøj Lorenzen, S., Westi, Emil Winther, Corsi, G., Gadekar, V. P., McQuade, A., Davtyan, H., Doncheva, Nadezhda Tsankova, Schmid, B., Chandrasekaran, Abinaya, Seemann, Ernst Stefan, Cirera, Susanna, Blurton-Jones, M., Meyer, M., Gorodkin, Jan, Aldana, Blanca & Freude, Kristine, 2023, In: Brain, Behavior, and Immunity. 113, p. 353-373

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Associating transcription factors and conserved RNA structures with gene regulation in the human brain

      Hecker, N., Seemann, Ernst Stefan, Silahtaroglu, Asli, Ruzzo, W. L. & Gorodkin, Jan, 2017, In: Scientific Reports. 7, 1, 16 p., 5776.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Bsgatlas: A unified bacillus subtilis genome and transcriptome annotation atlas with enhanced information access

      Geissler, Adrian Sven, Anthon, Christian, Alkan, F., González-Tortuero, E., Poulsen, L. D., Kallehauge, T. B., Breüner, A., Seemann, Ernst Stefan, Vinther, Jeppe & Gorodkin, Jan, 2021, In: Microbial Genomics. 7, 2, 17 p., 000524.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      CRISPRi screen for enhancing heterologous alpha-amylase yield in Bacillus subtilis

      Geissler, Adrian Sven, Fehler, A. O., Poulsen, L. D., Gonzalez-Tortuero, E., Kallehauge, T. B., Alkan, F., Anthon, Christian, Seemann, Ernst Stefan, Rasmussen, M. D., Breuener, A., Hjort, C., Vinther, Jeppe & Gorodkin, Jan, 2023, In: Journal of Industrial Microbiology and Biotechnology. 50, 1, 16 p., kuac028.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      CRISPRroots: On-and off-target assessment of RNA-seq data in CRISPR-Cas9 edited cells

      Corsi, G. I., Gadekar, V. P., Gorodkin, Jan & Seemann, Ernst Stefan, 2022, In: Nucleic Acids Research. 50, 4, 12 p., E20.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Detection of RNA structures in porcine EST data and related mammals

      Seemann, Ernst Stefan, Gilchrist, M. J., Hofacker, I. L., Stadler, P. F. & Gorodkin, Jan, 2007, In: BMC Genomics. 8, 316, 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Development of the entorhinal cortex occurs via parallel lamination during neurogenesis

      Liu, Y., Bergmann, T., Mori, Yuki, Peralvo Vidal, Juan Miguel, Pihl, M., Vasistha, Navneet A, Thomsen, Preben Dybdahl, Seemann, Ernst Stefan, Gorodkin, Jan, Hyttel, P., Khodosevich, Konstantin, Witter, M. P. & Hall, Vanessa Jane, 2021, In: Frontiers in Neuroanatomy. 15, 19 p., 663667.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells: [Plus] Corrigendum

      Hölzer, M., Krähling, V., Amman, F., Barth, E., Bernhart, S. H., Carmelo, V. A. O., Collatz, M., Doose, G., Eggenhofer, F., Ewald, J., Fallmann, J., Feldhahn, L. M., Fricke, M., Gebauer, J., Gruber, A. J., Hufsky, F., Indrischek, H., Kanton, S., Linde, J., Mostajo, N. & 19 others, Ochsenreiter, R., Riege, K., Rivarola-Duarte, L., Sahyoun, A. H., Saunders, S. J., Seemann, Ernst Stefan, Tanzer, A., Vogel, B., Wehner, S., Wolfinger, M. T., Backofen, R., Gorodkin, Jan, Grosse, I., Hofacker, I., Hoffmann, S., Kaleta, C., Stadler, P. F., Becker, S. & Marz, M., 7 Oct 2016, In: Scientific Reports. 6, 16 p., 34589.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Does rapid sequence divergence preclude RNA structure conservation in vertebrates?

      Seemann, Ernst Stefan, Mirza, A. H., Bang-Berthelsen, C. H., Garde, C., Christensen-Dalsgaard, M., Workman, C. T., Pociot, Flemming, Tommerup, Niels, Gorodkin, Jan & Ruzzo, W. L., 2022, In: Nucleic Acids Research. 50, 5, p. 2452-2463 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      DotAligner: Identification and clustering of RNA structure motifs

      Smith, M. A., Seemann, Ernst Stefan, Quek, X. C. & Mattick, J. S., Dec 2017, In: Genome Biology. 18, 1, 12 p., 244.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Emerging tools for RNA structure analysis in polymorphic data

      Radhakrishnan, S., Seemann, Ernst Stefan & Gorodkin, Jan, 2015, In: Biozoom. 2, p. 10-13 4 p.

      Research output: Contribution to journal › Journal article › Communication

    13. Published

      Flagella disruption in Bacillus subtilis increases amylase production yield

      Fehler, A. O., Kallehauge, T. B., Geissler, Adrian Sven, González-Tortuero, E., Seemann, Ernst Stefan, Gorodkin, Jan & Vinther, Jeppe, 2022, In: Microbial Cell Factories. 21, 11 p., 131.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Full-length RNA structure prediction of the HIV-1 genome reveals a conserved core domain

      Sükösd, Z., Andersen, E. S., Seemann, Ernst Stefan, Jensen, M. K., Hansen, M., Gorodkin, Jan & Kjems, J., 2 Dec 2015, In: Nucleic Acids Research. 43, 21, p. 10168-79 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions

      Seemann, Ernst Stefan, Richter, A. S., Gorodkin, Jan & Backofen, R., 2010, In: Algorithms for Molecular Biology. 5, 22, 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Identification and characterization of novel conserved RNA structures in Drosophila

      Kirsch, Rebecca, Seemann, Ernst Stefan, Ruzzo, W. L., Cohen, S. M., Stadler, P. F. & Gorodkin, Jan, 2018, In: BMC Genomics. 19, 20 p., 899.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Modelling Nonalcoholic Steatohepatitis In Vivo—A Close Transcriptomic Similarity Supports the Guinea Pig Disease Model

      Skat-Rørdam, Josephine, Ipsen, David Højland, Seemann, Ernst Stefan, Latta, M., Lykkesfeldt, Jens & Tveden-Nyborg, Pernille, 2021, In: Biomedicines. 9, 9, 18 p., 1198.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Modelling nonalcoholic steatohepatitis in vivo—a close transcriptomic similarity supports the guinea pig disease model

      Skat-Rørdam, Josephine, Ipsen, David Højland, Seemann, Ernst Stefan, Latta, M., Lykkesfeldt, Jens & Tveden-Nyborg, Pernille, Sep 2021, In: Biomedicines. 9, 9, 1198.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Multiple Sequence Alignments Enhance Boundary Definition of RNA Structures

      Sabarinathan, R., Anthon, Christian, Gorodkin, Jan & Seemann, Ernst Stefan, 4 Dec 2018, In: Genes. 9, 12, 17 p., 604.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Optimizing RNA structures by sequence extensions using RNAcop

      Hecker, N., Christensen-Dalsgaard, M., Seemann, Ernst Stefan, Havgaard, Jakob Hull, Stadler, P. F., Hofacker, I. L., Nielsen, Henrik & Gorodkin, Jan, 2015, In: Nucleic Acids Research. 43, 17, p. 8135-8145 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences

      Seemann, Ernst Stefan, Richter, A. S., Gesell, T., Backofen, R. & Gorodkin, Jan, 2011, In: Bioinformatics. 27, 2, p. 211-219 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Prediction of structured non-coding RNAs, RNA-RNA interactions and their (co)-expression in the brain

      Seemann, Ernst Stefan, 2010, Department of Basic Animal and Veterinary Sciences, University of Copenhagen. 195 p.

      Research output: Book/Report › Ph.D. thesis › Research

    23. Published

      Production of human entorhinal stellate cell-like cells by forward programming shows an important role of Foxp1 in reprogramming

      Bergmann, T., Liu, Y., Skov, J., Mogus, L., Lee, J., Pfisterer, U., Handfield, L. F., Asenjo-Martinez, A., Lisa-Vargas, I., Seemann, S. E., Lee, J. T. H., Patikas, N., Kornum, B. R., Denham, M., Hyttel, P., Witter, M. P., Gorodkin, J., Pers, T. H., Hemberg, M., Khodosevich, K. & 1 others, Hall, Vanessa Jane, 2022, In: Frontiers in Cell and Developmental Biology. 10, 976549.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Production of stellate cells from induced pluripotent stem cells to study Alzheimer's disease pathology

      Mogus, L., Bergmann, T. B., Liu, Y., Lee, J., Pfisterer, U. G., Handfield, L., Asenjo Martinez, A., Seemann, Ernst Stefan, Witter, M., Khodosevich, Konstantin, Gorodkin, Jan, Hemberg, M., Pers, Tune H & Hall, Vanessa Jane, 2019. 1 p.

      Research output: Contribution to conference › Conference abstract for conference › Communication

    25. Published

      Progress and harmonization of gene editing to treat human diseases: Proceeding of COST Action CA21113 GenE-HumDi

      Cavazza, A., Hendel, A., Bak, R. O., Rio, P., Güell, M., Lainšček, D., Arechavala-Gomeza, V., Peng, L., Hapil, F. Z., Harvey, J., Ortega, F. G., Gonzalez-Martinez, C., Lederer, C. W., Mikkelsen, K., Gasiunas, G., Kalter, N., Gonçalves, M. A. F. V., Petersen, J., Garanto, A., Montoliu, L. & 20 others, Maresca, M., Seemann, Ernst Stefan, Gorodkin, Jan, Mazini, L., Sanchez, R., Rodriguez-Madoz, J. R., Maldonado-Pérez, N., Laura, T., Schmueck-Henneresse, M., Maccalli, C., Grünewald, J., Carmona, G., Kachamakova-Trojanowska, N., Miccio, A., Martin, F., Turchiano, G., Cathomen, T., Luo, Y., Tsai, S. Q. & Benabdellah, K., 2023, In: Molecular Therapy Nucleic Acids. 34, 14 p., 102066.

      Research output: Contribution to journal › Review › Research › peer-review

    Previous 1 2 3 Next

    ID: 4223622