Veterinary Clinical Microbiology

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  1. Published

    Evaluation of a Salmonella‐specific DNA probe by colony hybridization using non‐isotopic and isotopic labeling

    AABO, S., THOMAS, A., HALL, M. L. M., SMITH, H. R. & Olsen, John Elmerdahl, Jul 1992, In: APMIS. 100, 7-12, p. 623-628 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Research note: Detection of Salmonella in minced meat by the polymerase chain reaction method

    Aabo, S., Andersen, J. K. & Olsen, John Elmerdahl, Sep 1995, In: Letters in Applied Microbiology. 21, 3, p. 180-182 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Salmonella identification by the polymerase chain reaction

    Aabo, S., Rasmussen, O. F., Roseen, L., Sørensen, P. D. & Olsen, John Elmerdahl, Jun 1993, In: Molecular and Cellular Probes. 7, 3, p. 171-178 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Prevalence of antibiotic‐resistant Escherichia coli in Danish pigs and cattle

    Aalbæk, Bent & Olsen, John Elmerdahl, Jul 1991, In: APMIS. 99, 7-12, p. 1103-1110 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Whole-genome sequence of Staphylococcus aureus S54F9 isolated from a chronic disseminated porcine lung abscess and used in human infection models

    Aalbæk, Bent, Jensen, Louise Kruse, Jensen, Henrik Elvang, Olsen, John Elmerdahl & Christensen, Henrik, 2015, In: Genome Announcements. 3, 5, 2 p., e01207-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Assembly of foot-and-mouth disease virus empty capsids synthesized by a vaccinia virus expression system

    Abrams, C. C., King, A. M. Q. & Belsham, Graham John, 1995, In: Journal of General Virology. 76, 12, p. 3089-3098 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Comparison of three Midazolam-based Sedation Protocols in Budgerigars (Melopsittacus Undulatus) and Black-cheeked Lovebirds (Agapornis Nigrigenis)

    Abreu, S. A., Laursen, S. A., Perrin, K. L., Tahas, Stamatis Alan & Bertelsen, Mads Frost, 2024, In: Journal of Zoo and Wildlife Medicine. 55, 1, p. 111-124 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Comparative study of PCR methods to detect Pasteurella multocida

    Adhikary, S., Bisgaard, M., Foster, G., Kiessling, N., Fahlen, A. R., Olsen, John Elmerdahl & Christensen, Henrik, 2013, In: Berliner und Muenchener Tieraerztliche Wochenschrift. 126, 9/10, p. 415-422 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Rodentibacter gen. nov including Rodentibacter pneumotropicus comb. nov., Rodentibacter heylii sp nov., Rodentibacter myodis sp nov., Rodentibacter ratti sp nov., Rodentibacter heidelbergensis sp nov., Rodentibacter trehalosifermentans sp nov., Rodentibacter rarus sp nov., Rodentibacter mrazii and two genomospecies

    Adhikary, S., Nicklas, W., Bisgaard, M., Boot, R., Kuhnert, P., Waberschek, T., Aalbæk, Bent, Korczak, B. & Christensen, Henrik, 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, 6, p. 1793-1806

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Development of multi locus sequence typing (MLST) of Rodentibacter pneumotropicus

    Adhikary, S., Bisgaard, M., Boot, R., Benga, L., Nicklas, W. & Christensen, Henrik, 2019, In: Veterinary Microbiology. 231, p. 11-17 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Clonal outbreaks of [Pasteurella] pneumotropica biovar Heyl in two mouse colonies

    Adhikary, S., Bisgaard, M., Dagnæs-Hansen, F. & Christensen, Henrik, 2017, In: Laboratory Animals. 51, 6, p. 613-621 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Reclassification of bisgaard taxon 5 as Caviibacterium pharyngocola gen. nov., sp. nov. and bisgaard taxon 7 as conservatibacter flavescens gen. nov., sp. nov

    Adhikary, S., Bisgaard, M., Nicklas, W. & Christensen, Henrik, 2018, In: International Journal of Systematic and Evolutionary Microbiology. 68, 2, p. 643-650 8 p., 002558.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    The antimicrobial activity of bupivacaine, lidocaine and mepivacaine against equine pathogens: An investigation of 40 bacterial isolates

    Adler, Ditte Marie Top, Damborg, Peter Panduro & Verwilghen, D. R., May 2017, In: Veterinary Journal. 223, p. 31-35

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    The stability and microbial contamination of bupivacaine, lidocaine and mepivacaine used for lameness diagnostics in horses

    Adler, Ditte Marie Top, Cornett, Claus, Damborg, Peter Panduro & Verwilghen, D. R., Dec 2016, In: The Veterinary Journal. 218, p. 7-12 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Combinations of mutations in envZ, ftsI, mrdA, acrB and acrR can cause high-level carbapenem resistance in Escherichia coli

    Adler, M., Anjum, M., Andersson, D. I. & Sandegren, L., May 2016, In: Journal of Antimicrobial Chemotherapy. 71, 5, p. 1188-1198

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Detection of new SARS-CoV-2 variants related to mink

    Adlhoch, C., Alm, E., Beaute, J., Broberg, E., Cenciarelli, O., Einöder-Moreno, M., Fleming, C., Gossner, C., Johansen, K., Mirinaviciute, G., Melidou, A., Nicolay, N., Plachouras, D., Scott, E., Severi, E., Westrel, T., Mølbak, K., Timen, A., Munnink, B. O., Koopmans, M. & 9 others, Brytting, M., Cavalieri, M., Schneider, E., Boklund, Anette, Nielsen, Søren Saxmose, Bøtner, A. G., Broglia, A., Kriz, N. & Stede, Y. V. D., 2020, European Centre for Disease Prevention and Control. 19 p.

    Research output: Book/Report › Report › Research

  17. Published

    Actinobacillus lignieresii-associated myocellulitis of the nasal planum in a Jersey cow

    Agerholm, Jørgen Steen, Damborg, Peter Panduro & Bennedsgaard, T. W., 2023, In: Veterinary Record Case Reports. 11, 4, 5 p., e669.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Perifert gangræn hos kalve: beskrivelse af tre tilfælde hos 1-3 måneder gamle kalve

    Agerholm, Jørgen Steen, Holm, W. & Aalbæk, Bent, 2014, In: Dansk Veterinaertidsskrift. 97, 16, p. 24-28 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    A Diagnostic Survey of Aborted Equine Fetuses and Stillborn Premature Foals in Denmark

    Agerholm, Jørgen Steen, Klas, E. M., Damborg, Peter Panduro, Borel, N., Pedersen, Hanne Gervi & Christoffersen, Mette, 2021, In: Frontiers in Veterinary Science. 8, 740621.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Multistrain models predict sequential multidrug treatment strategies to result in less antimicrobial resistance than combination treatment

    Ahmad, A., Zachariasen, C., Christiansen, L. E., Græsbøll, K., Toft, N., Matthews, L., Olsen, John Elmerdahl & Nielsen, Søren Saxmose, 23 Jun 2016, In: B M C Microbiology. 16, 10 p., 118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Modeling the growth dynamics of multiple Escherichia coli strains in the pig intestine following intramuscular ampicillin treatment

    Ahmad, A., Zachariasen, C., Christiansen, L. E., Græsbøll, K., Toft, N., Matthews, L., Nielsen, Søren Saxmose & Olsen, John Elmerdahl, 6 Sep 2016, In: BMC Microbiology. 16, 1, 10 p., 205.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Pharmacodynamic modelling of in vitro activity of tetracycline against a representative, naturally occurring population of porcine Escherichia coli

    Ahmad, A., Zachariasen, C., Christiansen, L. E., Græsbøll, K., Toft, N., Matthews, L., Damborg, Peter Panduro, Agersø, Y., Olsen, John Elmerdahl & Nielsen, Søren Saxmose, Nov 2015, In: Acta Veterinaria Scandinavica (Online). 57, 8 p., 79.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Abundance of mobilized colistin resistance gene mcr-1 in genetically diverse commensal Escherichia coli in broiler chicken in Bangladesh

    Ahmed, S., Das, T., Islam, M., Herrero-fresno, A., Biswas, P. & Olsen, J., 1 Dec 2020, In: International Journal of Infectious Diseases. 101, p. 77-78 2 p., 0187.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  24. Published

    High prevalence of mcr-1-encoded colistin resistance in commensal Escherichia coli from broiler chicken in Bangladesh

    Ahmed, S., Das, T., Islam, M. Z., Herrero-Fresno, A., Biswas, P. K. & Olsen, John Elmerdahl, 2020, In: Scientific Reports. 10, 13 p., 18637.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    The effect of colistin treatment on the selection of colistin-resistant Escherichia coli in weaner pigs

    Ahmed, S., Hansen, C., Dahlkilde, A. L., Herrero-Fresno, A., Pedersen, Ken Steen, Nielsen, Jens Peter & Olsen, John Elmerdahl, 2021, In: Antibiotics. 10, 4, 465.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    The genetic diversity of commensal Escherichia coli strains isolated from nonantimicrobial treated pigs varies according to age group

    Ahmed, S., Olsen, John Elmerdahl & Herrero-Fresno, A., 2017, In: PLoS ONE. 12, 5, 18 p., e0178623.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Prevalence of genetic determinants and phenotypic resistance to ciprofloxacin in Campylobacter jejuni from lithuania

    Aksomaitiene, J., Ramonaite, S., Olsen, John Elmerdahl & Malakauskas, M., Feb 2018, In: Frontiers in Microbiology. 9, 2, 6 p., 203.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Whole genome sequence-based prediction of resistance determinants in high-level multidrug-resistant Campylobacter jejuni isolates in Lithuania

    Aksomaitiene, J., Novoslavskij, A., Kudirkiene, E., Gabinaitiene, A. & Malakauskas, M., 2021, In: Microorganisms. 9, 1, p. 1-11 11 p., 66.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Draft Genome Sequence of Ciprofloxacin and Ceftriaxone Resistant Campylobacter jejuni MM26-781 Assigned to Novel ST Isolated From Common Pigeon in Lithuania

    Aksomaitiene, J., Ramonaite, S., Novoslavskij, A., Malakauskas, M. & Kudirkiene, E., 2019, In: Evolutionary Bioinformatics. 15, p. 1-4

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Programme preface

    Alban, L., Nielsen, Liza Rosenbaum, Nielsen, Søren Saxmose, Guardabassi, Luca, Houe, Hans, Damborg, Peter Panduro, Agger, Jens Frederik Gramstrup & Fahrion, A., 6 Oct 2014, Proceeding of the Annual Scientific Conference and Annual Meeting of the European College of Veterinary Public Health: Evidence-informed decision-making within Veterinary Public Health. NIelsen, S. S. (ed.). University of Copenhagen, p. 11 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Preface/postscript › Research

  31. Published

    Development of reverse transcription-PCR (oligonucleotide probing) enzyme-linked immunosorbent assays for diagnosis and preliminary typing of foot-and-mouth disease: A new system using simple and aqueous-phase hybridization

    Alexandersen, S., Forsyth, M. A., Reid, S. M. & Belsham, Graham John, 2000, In: Journal of clinical microbiology. 38, 12, p. 4604-4613 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Further evidence of Chelonid herpesvirus 5 (ChHV5) latency: high levels of ChHV5 DNA detected in clinically healthy marine turtles

    Alfaro Nuñez, L. A., Bojesen, Anders Miki, Bertelsen, Mads Frost, Wales, N., Balazs, G. H. & Gilbert, M Thomas P, 27 Jul 2016, In: PeerJ. 4, 16 p., e2274.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Global distribution of Chelonid fibropapilloma-associated herpesvirus among clinically healthy sea turtles

    Alfaro Nuñez, L. A., Bertelsen, Mads Frost, Bojesen, Anders Miki, Rasmussen, I., Zepeda Mendoza, M. L., Olsen, Morten Tange & Gilbert, M Thomas P, 2014, In: B M C Evolutionary Biology. 14, 11 p., 206.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Characterization of Escherichia coli and other bacteria isolated from condemned broilers at a Danish abattoir

    Alfifi, Ahmed Eassa H, Christensen, Jens Peter, Hounmanou, Yaovi Mahuton Gildas, Sandberg, M. & Dalsgaard, Anders, 2022, In: Frontiers in Microbiology. 13, 13 p., 1020586.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    The association between meat inspection codes, footpad lesions and thinning of broiler flocks in the Danish broiler production

    Alfifi, Ahmed Eassa H, Dalsgaard, Anders, Christensen, Jens Peter, Larsen, M. H. & Sandberg, M., 2020, In: Preventive Veterinary Medicine. 185, 105205.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    MALDI-TOF mass spectrometry confirms difficulties in separating species of the Avibacterium genus

    Alispahic, M., Christensen, Henrik, Bisgaard, M., Hess, M. & Hess, C., 2014, In: Avian pathology : journal of the W.V.P.A. 43, 3, p. 258-263 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Clarification of large-volume bacterial cultures using a centrifuge-free protocol

    Allahghadry, T., Bojesen, Anders Miki, Whitehead, B. J. & Antenucci, F., 2022, In: Journal of Applied Microbiology. 133, 2, p. 870-882

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Clonal spread of multi-resistant Gallibacterium anatis isolates among Iranian broilers and layers

    Allahghadry, T., Ng, D. Y. K., Dibaei, A. & Bojesen, Anders Miki, 2021, In: Veterinary Research. 52, 27.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Overview and evaluation of existing guidelines for rational antimicrobial use in small-animal veterinary practice in europe

    Allerton, F., Prior, C., Bagcigil, A. F., Broens, E., Callens, B., Damborg, Peter Panduro, Dewulf, J., Filippitzi, M. E., Carmo, L. P., Gómez-Raja, J., Harpaz, E., Mateus, A., Nolff, M., Phythian, C. J., Timofte, D., Zendri, F. & Jessen, Lisbeth Rem, 2021, In: Antibiotics. 10, 4, 409.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Enhancing the Efficacy of Chloramphenicol Therapy for Escherichia coli by Targeting the Secondary Resistome

    Alobaidallah, M. S. A., García, V., Wellner, Sandra Marina, Thomsen, Line Elnif, Herrero-Fresno, A. & Olsen, John Elmerdahl, 2024, In: Antibiotics. 13, 1, 14 p., 73.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Uncovering the Important Genetic Factors for Growth during Cefotaxime-Gentamicin Combination Treatment in blaCTX-M-1 Encoding Escherichia coli

    Alobaidallah, M. S. A., García, V., De Mets, R., Wellner, Sandra Marina, Thomsen, Line Elnif, Herrero-Fresno, A. & Olsen, John Elmerdahl, 2023, In: Antibiotics. 12, 6, 24 p., 993.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Severe Human Case of Zoonotic Infection with Swine-Origin Influenza A Virus, Denmark, 2021

    Andersen, K. M., Vestergaard, L. S., Nissen, Jakob Nybo, George, Sophie Joanna, Ryt-Hansen, Pia, Hjulsager, C. K., Krog, J. S., Skov, M. N., Alexandersen, S., Larsen, Lars & Trebbien, R., 2022, In: Emerging Infectious Diseases . 28, 12, p. 2561-2564 4 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  43. Published

    Proteomes of Uropathogenic Escherichia coli Growing in Human Urine and in J82 Urinary Bladder Cells

    Andersen, S., Nawrocki, A., Johansen, A. E., Herrero-Fresno, A., Menéndez, V. G., Møller-Jensen, J. & Olsen, John Elmerdahl, 2022, In: Proteomes. 10, 2, 15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    The impact of inactivation of the purine biosynthesis genes, purN and purT, on growth and virulence in uropathogenic E. coli

    Andersen-Civil, A. I. S., Ahmed, S., Guerra, Priscila Regina, Andersen, T. E., Hounmanou, Yaovi Mahuton Gildas, Olsen, John Elmerdahl & Herrero-Fresno, A., 2018, In: Molecular Biology Reports. 45, 6, p. 2707-2716 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Prevalence and antimicrobial resistance of Salmonella serovars isolated from poultry in Ghana

    Andoh, L. A., Dalsgaard, Anders, Obiri-Danso, K., Newman, M. J., Barco, L. & Olsen, John Elmerdahl, Nov 2016, In: Epidemiology and Infection. 144, 15, p. 3288-3299 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Prevalence and characterization of Salmonella among humans in Ghana

    Andoh, L. A., Ahmed, S., Olsen, John Elmerdahl, Obiri-Danso, K., Newman, M. J., Opintan, J. A., Barco, L. & Dalsgaard, Anders, 2017, In: Tropical Medicine and Health. 45, 11 p., 3.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli

    Anjum, M., Madsen, Jonas Stenløkke, Nesme, Joseph, Jana, B., Wiese, M., Jasinskyte, D., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Dalsgaard, Anders, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, 2019, In: Antimicrobial Agents and Chemotherapy. 63, 5, 13 p., e02528-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities

    Anjum, M., Madsen, Jonas Stenløkke, Espinosa-Gongora, C., Jana, B., Wiese, M., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, Sep 2018, In: Journal of Microbiological Methods. 152, p. 18-26 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Nickel allergy and relationship with Staphylococcus aureus in atopic dermatitis

    Anna, B. M., Grazyna, A., Wojciech, D., Aleksander, O., Anna, B., Andrzej, K., Magnowska, Z. & Krystyna, O., 1 Jan 2016, In: Journal of Trace Elements in Medicine and Biology. 33, p. 1-7 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Prevalence and antimicrobial resistance profile of Escherichia coli and salmonella isolated from diarrheic calves

    Ansari, A. R. M. I. H., Rahman, M. M., Islam, M. Z., Das, B. C., Habib, A., Belal, S. M. S. H. & Islam, K., 23 Apr 2014, In: Journal of Animal Health and Production . 2, 1, p. 12-15 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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