Veterinary Clinical Microbiology

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  1. 2022
  2. Published

    A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta)

    Palmada-Flores, M., Orkin, J. D., Haase, B., Mountcastle, J., Bertelsen, Mads Frost, Fedrigo, O., Kuderna, L. F. K., Jarvis, E. D. & Marques-Bonet, T., 2022, In: GigaScience. 11, giac026.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)

    Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Ernst, M., Hansen, M., Forberg, T., Gopalakrishnan, Shyam, Gilbert, M Thomas P, Bojesen, Anders Miki, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2022, In: Microbiome. 10, 19 p., 21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    ANTIBACTERIAL EFFECTS OF SINGLE AND COMBINED CRUDE EXTRACTS OF SYNADENIUM GLAUCESCENS AND COMMIPHORA SWYNNERTONII

    Ochollah, G. M., Msengwa, S. Z., Mabiki, P. F., Kusiluka, J. M. L., Mdegela, H. R. & Olsen, John Elmerdahl, 2022, In: African Journal of Infectious Diseases. 16, 2, p. 9-16 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Addressing a Rule of Thumb: Modeling the Effects of Meteorological Conditions on Prescription of Antimicrobials in Aquaculture

    Villumsen, Kasper Rømer & Bojesen, Anders Miki, 2022, In: Microbiology Spectrum. 10, 5, 14 p., e0175222.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Airborne environmental DNA for terrestrial vertebrate community monitoring

    Lynggaard, Christina Islas, Bertelsen, Mads Frost, Jensen, Casper Vindahl, Johnson, Matthew Stanley, Frøslev, Tobias Guldberg, Olsen, Morten Tange & Bohmann, Kristine, 2022, In: Current Biology. 32, 3, p. 701-707.e5 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Antibiotic resistance and polymyxin B resistance mechanism of Aeromonas spp. isolated from yellow catfish, hybrid snakeheads and associated water from intensive fish farms in Southern China

    Li, L., Yao, R., Olsen, Rikke Heidemann, Zhang, Y. & Meng, H., 2022, In: LWT. 166, 113802.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Antimicrobial-induced horizontal transfer of antimicrobial resistance genes in bacteria: a mini-review

    Liu, G., Thomsen, Line Elnif & Olsen, John Elmerdahl, 2022, In: The Journal of antimicrobial chemotherapy. 77, 3, p. 556-567 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  9. Published

    Anvendelse af probiotika før klækning

    Poulsen, Louise Ladefoged, Sandvang, D., Dencker, M., Juul, J. & Thoefner, Ida , 2022, In: Dansk Erhvervsfjerkrae. 51, 3, p. 62-65 4 p.

    Research output: Contribution to journal › Journal article › Research

  10. Published

    Assessment of animal diseases caused by bacteria resistant to antimicrobials: kept fish species

    EFSA Panel on Animal Health and Welfare, Nielsen, S. S., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortazar Schmidt, C., Herskin, M., Michel, V., Miranda Chueca, M. A., Padalino, B., Pasquali, P., Roberts, H. C., Spoolder, H., Stahl, K., Velarde, A., Viltrop, A., Winckler, C. & 9 others, Dewulf, J., Guardabassi, Luca, Hilbert, F., Mader, R., Romalde, J. L., Smith, P., Baldinelli, F., Kohnle, L. & Alvarez, J., 2022, In: EFSA Journal. 20, 2, p. 1-23 23 p., e07076.

    Research output: Contribution to journal › Journal article › Research

  11. Published

    Assessment of automated assays for serum amyloid A, haptoglobin (PIT54) and basic biochemistry in broiler breeders experimentally infected with Escherichia coli

    Kromann, Sofie, Olsen, Rikke Heidemann, Bojesen, Anders Miki, Jensen, Henrik Elvang & Thoefner, Ida , 2022, In: Veterinary Research. 53, 1, 7 p., 25.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Assessment of the feed additive consisting of Lactiplantibacillus plantarum (formerly Lactobacillus plantarum) NCIMB 30236 for all animal species for the renewal of its authorisation (BioCC OÜ)

    EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), E. P. O. A. A. P. O. S. U. I. A. F. (., 2022, In: EFSA Journal. 20, 3, e07149.

    Research output: Contribution to journal › Journal article › Research

  13. Published

    Assessment of the feed additive consisting of Lactococcus lactis NCIMB 30117 for all animal species for the renewal of its authorisation (Chr. Hansen A/S)

    Bampidis, V., Azimonti, G., Bastos, M. D. L., Christensen, H., Dusemund, B., Fašmon Durjava, M., Kouba, M., López-Alonso, M., López Puente, S., Marcon, F., Mayo, B., Pechová, A., Petkova, M., Ramos, F., Sanz, Y., Villa, R. E., Woutersen, R., Saarela, M., Brozzi, R., Galobart, J. & 3 others, Gregoretti, L., Revez, J. & EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), E. P. O. A. A. P. O. S. U. I. A. F. (., 2022, In: EFSA Journal. 20, 4, e07243.

    Research output: Contribution to journal › Journal article › Research

  14. Published

    Assessment of the feed additive consisting of Lactococcus lactis DSM 11037 for all animal species for the renewal of its authorisation (Chr. Hansen A/S)

    EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), E. P. O. A. A. P. O. S. U. I. A. F. (., 2022, In: EFSA Journal. 20, 4, e07241.

    Research output: Contribution to journal › Journal article › Research

  15. Published

    Assessment of the feed additive consisting of Lactococcus lactis NCIMB 30160 for all animal species for the renewal of its authorisation (Lactosan GmbH & Co KG)

    EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), E. P. O. A. A. P. O. S. U. I. A. F. (., 2022, In: EFSA Journal. 20, 1, e06975.

    Research output: Contribution to journal › Journal article › Research

  16. Published

    Assessment of the feed additive consisting of Lentilactobacillus buchneri (formerly Lactobacillus buchneri) DSM 12856 for all animal species for the renewal of its authorisation (Lactosan GmbH & Co KG)

    EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), E. P. O. A. A. P. O. S. U. I. A. F. (., 2022, In: EFSA Journal. 20, 2, e07148.

    Research output: Contribution to journal › Journal article › Research

  17. Published

    Association between Antibiotic Consumption and Resistance in Mink Production

    Nikolaisen, Nanett Kvist, Fertner, M., Lassen, D. C. K., Chehabi, C. N., Ronaghinia, A. A., Chriél, M., Jensen, V. F., Jensen, L. B., Pedersen, K. & Struve, T., 2022, In: Antibiotics. 11, 7, 927.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Characteristics and Global Occurrence of Human Pathogens Harboring Antimicrobial Resistance in Food Crops: A Scoping Review

    Brunn, A., Kadri-Alabi, Z., Moodley, Arshnee, Guardabassi, Luca, Taylor, P., Mateus, A. & Waage, J., 2022, In: Frontiers in Sustainable Food Systems. 6, 824714.

    Research output: Contribution to journal › Review › Research › peer-review

  19. Published

    Characterization of Influenza D Virus in Danish Calves

    Goecke, Nicole Bakkegård, Liang, Yuan, Dam Otten, Nina, Hjulsager, C. K. & Larsen, Lars, 2022, In: Viruses. 14, 2, 423.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Characterization of extended-spectrum cephalosporins and fluoroquinolone resistance of a Salmonella enterica serovar Thompson isolate from ready-to-eat pork product in China

    Li, L., Olsen, Rikke Heidemann, Xiao, J., Liang, M., Meng, H. & Peng, S., 2022, In: Frontiers in Microbiology. 13, 964009.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Characterization of Escherichia coli and other bacteria isolated from condemned broilers at a Danish abattoir

    Alfifi, Ahmed Eassa H, Christensen, Jens Peter, Hounmanou, Yaovi Mahuton Gildas, Sandberg, M. & Dalsgaard, Anders, 2022, In: Frontiers in Microbiology. 13, 13 p., 1020586.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Clarification of large-volume bacterial cultures using a centrifuge-free protocol

    Allahghadry, T., Bojesen, Anders Miki, Whitehead, B. J. & Antenucci, F., 2022, In: Journal of Applied Microbiology. 133, 2, p. 870-882

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Coating of bone implants with silica, hyperbranched polyethyleneimine, and gentamicin prevents development of osteomyelitis in a porcine model

    Jensen, L. K., Jensen, H. E., Blirup-Plum, S. A., Bue, M., Hanberg, P., Kvich, L., Aalbæk, B., López, Y., Soto, S. M., Douloudi, M., Papageorgiou, M., Nikoli, E., Arkas, M., Gutiérrez-del-Río, I., López-Ibáñez, S., Villar, C. J., Lombó, F., Gkomoza, P., Kitsou, I., Tsetsekou, A. & 1 others, Vardavoulias, M., 2022, In: Materialia. 24, 101473.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Comparative genomic analysis reveals new evidence of genus boundary for family Iridoviridae and explores qualified hallmark genes

    Zhao, R., Gu, C., Zou, X., Zhao, M., Xiao, W., He, M., He, L., Yang, Q., Geng, Y. & Yu, Z., 2022, In: Computational and Structural Biotechnology Journal. 20, p. 3493-3502 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Cortical Morphology and White Matter Tractography of Three Phylogenetically Distant Primates: Evidence for a Simian Elaboration

    Roumazeilles, L., Lange, F. J., Benn, R. A., Andersson, J. L. R., Bertelsen, Mads Frost, Manger, P. R., Flach, E., Khrapitchev, A. A., Bryant, K. L., Sallet, J. & Mars, R. B., 2022, In: Cerebral Cortex. 32, 8, p. 1608–1624 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    DEVELOPMENT OF A QUANTITATIVE IMMUNOASSAY FOR SERUM HAPTOGLOBIN AS A PUTATIVE DISEASE MARKER IN THE SOUTHERN WHITE RHINOCEROS (CERATOTHERIUM SIMUM SIMUM)

    Petersen, H. H., Stenbak, R., Blaabjerg, C., Krogh, Anne Kirstine Havnsøe, Bertelsen, Mads Frost, Buss, P. & Heegaard, P. M. H., 2022, In: Journal of Zoo and Wildlife Medicine. 53, 1, p. 141-152 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Defining the scope of the European Antimicrobial Resistance Surveillance network in Veterinary medicine (EARS-Vet): a bottom-up and One Health approach

    EU-JAMRAI, E., 2022, In: The Journal of antimicrobial chemotherapy. 77, 3, p. 816-826 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Development of a duplex qPCR for the differentiation of a live attenuated Escherichia coli aroA mutant vaccine strain from field isolates in chickens

    Leurs, K., Goossens, E., Christensen, Henrik, Mainil, J. G., Vancraeynest, D., Ducatelle, R. & Van Immerseel, F., 2022, In: PLoS ONE. 17, 13 p., e0278949.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Disease control tools to secure animal and public health in a densely populated world

    Charlier, J., Barkema, H. W., Becher, P., De Benedictis, P., Hansson, I., Hennig-Pauka, I., La Ragione, R., Larsen, Lars, Madoroba, E., Maes, D., Marin, C. M., Mutinelli, F., Nisbet, A. J., Podgorska, K., Vercruysse, J., Vitale, F., Williams, D. J. L. & Zadoks, R. N., 2022, In: The Lancet Planetary Health. 6, 10, p. E812-E824 13 p.

    Research output: Contribution to journal › Review › Research › peer-review

  30. Published

    Effect of pH and Salinity on the Ability of Salmonella Serotypes to Form Biofilm

    Petrin, S., Mancin, M., Losasso, C., Deotto, S., Olsen, John Elmerdahl & Barco, L., 2022, In: Frontiers in Microbiology. 13, 821679.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Efficacy of a feed additive consisting of endo-1,4-beta-xylanase produced by Trichoderma citrinoviride (IMI SD 135) (HOSTAZYM® X) for sows in order to have benefits in piglets (Huvepharma NV)

    EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), E. P. O. A. A. P. O. S. U. I. A. F. (., 2022, In: EFSA Journal. 20, 3, e07154.

    Research output: Contribution to journal › Journal article › Research

  32. Published

    Efficacy of natural antimicrobial peptides versus peptidomimetic analogues: a systematic review

    Hellewell, L., Gilani, N. M., Stanton, C. J., Pelligand, L., Franzyk, Henrik, Guardabassi, Luca & Good, L., 2022, In: Future Medicinal Chemistry. 14, 24, p. 1899–1921

    Research output: Contribution to journal › Review › Research › peer-review

  33. Published

    Emergence of methicillin resistance predates the clinical use of antibiotics

    Larsen, J., Raisen, C. L., Ba, X., Sadgrove, N. J., Padilla-González, G. F., Simmonds, M. S. J., Loncaric, I., Kerschner, H., Apfalter, P., Hartl, R., Deplano, A., Vandendriessche, S., Černá Bolfíková, B., Hulva, P., Arendrup, M. C., Hare, R. K., Barnadas, C., Stegger, M., Sieber, R. N., Skov, R. L. & 44 others, Petersen, A., Angen, Ø., Rasmussen, S. L., Espinosa-Gongora, C., Aarestrup, F. M., Lindholm, L. J., Nykäsenoja, S. M., Laurent, F., Becker, K., Walther, B., Kehrenberg, C., Cuny, C., Layer, F., Werner, G., Witte, W., Stamm, I., Moroni, P., Jørgensen, H. J., de Lencastre, H., Cercenado, E., García-Garrote, F., Börjesson, S., Hæggman, S., Perreten, V., Teale, C. J., Waller, A. S., Pichon, B., Curran, M. D., Ellington, M. J., Welch, J. J., Peacock, S. J., Seilly, D. J., Morgan, F. J. E., Parkhill, J., Hadjirin, N. F., Lindsay, J. A., Holden, M. T. G., Edwards, G. F., Foster, G., Paterson, G. K., Didelot, X., Holmes, M. A., Harrison, E. M. & Larsen, A. R., 2022, In: Nature. 602, p. 135–141

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Engineering a CRISPR interference system targeting AcrAB-TolC efflux pump to prevent multidrug resistance development in Escherichia coli

    Wan, X., Li, Q., Olsen, Rikke Heidemann, Meng, H., Zhang, Z., Wang, J., Zheng, H., Li, L. & Shi, L., 2022, In: The Journal of antimicrobial chemotherapy. 77, 8, p. 2158-2166 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Epidemiological Prevalence of Phenotypical Resistances and Mobilised Colistin Resistance in Avian Commensal and Pathogenic E. coli from Denmark, France, The Netherlands, and the UK

    Mead, A., Billon-Lotz, C., Olsen, Rikke Heidemann, Swift, B., Richez, P., Stabler, R. & Pelligand, L., 2022, In: Antibiotics. 11, 5, 631.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Estimating transmission dynamics of African swine fever virus from experimental studies

    Main, A. R., Halasa, T., Olesen, A. S., Lohse, L., Rasmussen, T. B., Belsham, Graham John, Boklund, Anette, Bøtner, A. & Christiansen, L. E., 2022, In: Transboundary and Emerging Diseases. 69, 6, p. 3858-3867

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Evaluation of a novel multiplex qPCR method for rapid detection and quantification of pathogens associated with calf diarrhoea

    Pansri, P., Svensmark, B., Liu, G., Thamsborg, Stig Milan, Kudirkiene, E., Nielsen, H. V., Goecke, Nicole Bakkegård & Olsen, John Elmerdahl, 2022, In: Journal of Applied Microbiology. 133, 4, p. 2516-2527

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Evaluation of the diagnostic performance of a commercially available point-of-care test for post weaning diarrhoea in pigs-a pilot study

    Jakobsen, Nadia, Goecke, Nicole Bakkegård & Pedersen, Ken Steen, 2022, In: Porcine Health Management. 8, 49.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Experimental Infection of Pigs with Recent European Porcine Epidemic Diarrhea Viruses

    Lazov, Christina Marie, Lohse, L., Belsham, Graham John, Rasmussen, T. B. & Bøtner, A., 2022, In: Viruses. 14, 12, 2751.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Experimental Infections of Pigs with African Swine Fever Virus (Genotype II); Studies in Young Animals and Pregnant Sows

    Lohse, L., Nielsen, J., Uttenthal, Å., Olesen, A. S., Strandbygaard, B., Rasmussen, T. B., Belsham, Graham John & Bøtner, A., 2022, In: Viruses. 14, 7, 1387.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Experimental infection of high health pigs with porcine circovirus type 2 (PCV2) and Lawsonia intracellularis

    Hansen, Mette Sif, Jensen, T. K., Hjulsager, C. K., Angen, Ø., Riber, U., Nielsen, J., Heegaard, P. M. H. & Larsen, Lars, 2022, In: Frontiers in Veterinary Science. 9, 994147.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Exploring the resistome, virulome, mobilome and microbiome along pork production chain using metagenomics

    Li, L., Xiao, Y., Wang, C., Olsen, Rikke Heidemann, Meng, H. & Shi, L., 2022, In: International Journal of Food Microbiology. 371, 109674.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Fecal Shedding of Multidrug Resistant Escherichia coli Isolates in Dogs Fed with Raw Meat-Based Diets in Brazil

    Ramos, C. P., Kamei, C. Y. I., Viegas, F. M., de Melo Barbieri, J., Cunha, J. L. R., Hounmanou, Yaovi Mahuton Gildas, Coura, F. M., Santana, J. A., Lobato, F. C. F., Bojesen, Anders Miki & Silva, R. O. S., 2022, In: Antibiotics. 11, 4, 534.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Fine-regulation of myosin relaxed states in vertebrate muscle

    Thomsen, Elise Julie Melhedegaard, Sonne, A., Bertelsen, Mads Frost, Vermeulen, E., Ganswindt, A., Wang, T. & Ochala, Julien, 2022, In: FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 36

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Fugleinfluenza (Aviær Influenzavirus)

    Larsen, Lars & Trebbien, R., 2022, Risikovurdering af zoonotiske virus og andre agens, der kan forekomme i dyr og kan have epidemisk potentiale. Bødker, R., Kjær, L. J., Jokelainen, P., Trebbien, R., Boklund, A. & Larsen, L. E. (eds.). Københavns Universitet, p. 21-28 7 p.

    Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research

  46. Published

    GENOMIC CHARACTERIZATION OF MULTIDRUG-RESISTANT EXTENDED-SPECTRUM β-LACTAMASE-PRODUCING ESCHERICHIA COLI AND KLEBSIELLA PNEUMONIAE FROM CHIMPANZEES (PAN TROGLODYTES) FROM WILD AND SANCTUARY LOCATIONS IN UGANDA

    Bager, S. L., Kakaala, I., Kudirkiene, E., Byarugaba, D. K. & Olsen, John Elmerdahl, 2022, In: Journal of Wildlife Diseases. 58, 2, p. 269-278 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Garlic-Derived Metabolites Exert Antioxidant Activity, Modulate Gut Microbiota Composition and Limit Citrobacter rodentium Infection in Mice

    Zhu, L., Andersen-Civil, A. I. S., Castro-Meija, J. L., Nielsen, Dennis Sandris, Blanchard, A., Olsen, John Elmerdahl, Thamsborg, Stig Milan & Williams, Andrew Richard, 2022, In: Antioxidants. 11, 10, 14 p., 2033.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Genetic context of blaCTX–M–55 and qnrS1 genes in a foodborne Salmonella enterica serotype Saintpaul isolate from China

    Li, L., Olsen, Rikke Heidemann, Xiao, J., Meng, H., Peng, S. & Shi, L., 2022, In: Frontiers in Microbiology. 13, 899062.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Genome-wide analysis of fitness factors in uropathogenic Escherichia coli in a pig urinary tract infection model

    García, V., Stærk, K., Alobaidallah, M. S. A., Grønnemose, R. B., Guerra, Priscila Regina, Andersen, T. E., Olsen, John Elmerdahl & Herrero-Fresno, A., 2022, In: Microbiological Research. 265, p. 127202 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Genomic Analysis of Escherichia coli Longitudinally Isolated from Broiler Breeder Flocks after the Application of an Autogenous Vaccine

    Lozica, L., Villumsen, Kasper Rømer, Li, G., Hu, X., Maurić Maljković, M. & Gottstein, Ž., 2022, In: Microorganisms. 10, 2, 377.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Genomic Characterization of mcr-1-Carrying Foodborne Salmonella enterica serovar Typhimurium and Identification of a Transferable Plasmid Carrying mcr-1, blaCTX-M-14, qnrS2, and oqxAB Genes From Ready-to-Eat Pork Product in China

    Li, L., Wan, X., Olsen, Rikke Heidemann, Xiao, J., Wang, C., Xu, X., Meng, H. & Shi, L., 2022, In: Frontiers in Microbiology. 13, 903268.

    Research output: Contribution to journal › Journal article › Research › peer-review

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