Jakob Hull Havgaard

Jakob Hull Havgaard

Associate Professor

ORCID: 0000-0002-4816-814X

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  1. Published

    De novo prediction of structured RNAs from genomic sequences

    Gorodkin, Jan, Hofacker, I. L., Þórarinsson, E., Yao, Z., Havgaard, Jakob Hull & Ruzzo, W. L., 2010, In: Trends in Biotechnology. 28, 1, p. 9-19 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Adipocyte gene expression and DNA methylation patterns differ significantly between lean and obese pigs

    Jacobsen, M. J., Havgaard, Jakob Hull, Mentzel, Caroline M. Junker, Sørensen, P. M., Pundhir, Sachin, Anthon, Christian, Karlskov-Mortensen, Peter, Bruun, Camilla Vibeke Sichlau, Cirera, Susanna, Gorodkin, Jan, Jørgensen, Claus Bøttcher, Barrès, Romain & Fredholm, Merete, 9 Nov 2016, In: Journal of Animal Science. 94, Supplement 4, p. 46-47 2 p., P2019.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  3. Published

    Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots

    Kato, Y., Gorodkin, Jan & Havgaard, Jakob Hull, Dec 2017, In: BMC Genomics. 18, 1, 935.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Assessing the miRNA sponge potential of RUNX1T1 in t(8;21) acute myeloid leukemia

    Junge, A., Zandi, R., Havgaard, Jakob Hull, Gorodkin, Jan & Cowland, J. B., 2017, In: Gene. 615, p. 35-40 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parameters

    Alkan, F., Wenzel, Anne, Anthon, Christian, Havgaard, Jakob Hull & Gorodkin, Jan, 2018, In: Genome Biology. 19, 13 p., 177.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment

    Sundfeld, D., Havgaard, Jakob Hull, Gorodkin, Jan & De Melo, A. C. M. A., 2017, Proceedings: 2017 25th Euromicro International Conference on Parallel, Distributed and Network-Based Processing, PDP 2017. IEEE, p. 295-302 8 p. 7912663

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  7. Published

    Comparative ncRNA gene and structure prediction using Foldalign and FoldalignM

    Havgaard, Jakob Hull, Kaur, S. & Gorodkin, Jan, 2012, In: Current Protocols in Bioinformatics. 39, p. 12.11.1-12.11.15 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Epigenetic and Transcriptomic Characterization of Pure Adipocyte Fractions From Obese Pigs Identifies Candidate Pathways Controlling Metabolism

    Jacobsen, M. J., Havgaard, Jakob Hull, Anthon, Christian, Mentzel, Caroline M. Junker, Cirera, Susanna, Krogh, P. M., Pundhir, Sachin, Karlskov-Mortensen, Peter, Bruun, C. S., Lesnik, P., Guerin, M., Gorodkin, Jan, Jørgensen, Claus Bøttcher, Fredholm, Merete & Barrès, Romain, 2019, In: Frontiers in Genetics. 10, 13 p., 1268.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix

    Havgaard, Jakob Hull, Torarinsson, E. & Gorodkin, Jan, 2007, In: PLoS Computational Biology. 3, 10, p. 1896-1908 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment

    Sundfeld, D., Havgaard, Jakob Hull, de Melo, A. C. M. A. & Gorodkin, Jan, 2016, In: Bioinformatics. 32, 8, p. 1238-1240 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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