Jan Gorodkin
Professor
- 2018
- Published
Warburg Effect Metabolism Drives Neoplasia in a Drosophila Genetic Model of Epithelial Cancer
Eichenlaub, T., Villadsen, René, Freitas, F. C. P., Andrejeva, Diana, Aldana, Blanca, Nguyen, H. T., Petersen, Ole William, Gorodkin, Jan, Herranz, Hector & Cohen, S. M., 2018, In: Current Biology. 28, 20, p. 3220-3228.e6Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots
Kato, Y., Gorodkin, Jan & Havgaard, Jakob Hull, Dec 2017, In: BMC Genomics. 18, 1, 935.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assessing the miRNA sponge potential of RUNX1T1 in t(8;21) acute myeloid leukemia
Junge, A., Zandi, R., Havgaard, Jakob Hull, Gorodkin, Jan & Cowland, J. B., 2017, In: Gene. 615, p. 35-40 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Associating transcription factors and conserved RNA structures with gene regulation in the human brain
Hecker, N., Seemann, Ernst Stefan, Silahtaroglu, Asli, Ruzzo, W. L. & Gorodkin, Jan, 2017, In: Scientific Reports. 7, 1, 16 p., 5776.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment
Sundfeld, D., Havgaard, Jakob Hull, Gorodkin, Jan & De Melo, A. C. M. A., 2017, Proceedings: 2017 25th Euromicro International Conference on Parallel, Distributed and Network-Based Processing, PDP 2017. IEEE, p. 295-302 8 p. 7912663Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
RAIN: RNA-protein Association and Interaction Networks
Junge, A., Refsgaard, J. C., Garde, C., Pan, X., Santos, A., Alkan, F., Anthon, Christian, von Mering, C., Workman, C. T., Jensen, Lars Juhl & Gorodkin, Jan, 2017, In: Database: The Journal of Biological Databases and Curation. 2017, 9 p., baw167.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RIsearch2: suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targets
Alkan, F., Wenzel, Anne, Palasca, Oana, Kerpedjiev, P., Rudebeck, A. F., Stadler, P. F., Hofacker, I. L. & Gorodkin, Jan, 2017, In: Nucleic Acids Research. 45, 8, 13 p., e60.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RNAscClust: Clustering RNA sequences using structure conservation and graph based motifs
Miladi, M., Junge, A., Costa, F., Seemann, Ernst Stefan, Havgaard, Jakob Hull, Gorodkin, Jan & Backofen, R., 2017, In: Bioinformatics. 33, 14, p. 2089-2096 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The identification and functional annotation of RNA structures conserved in vertebrates
Seemann, Ernst Stefan, Mirza, A. H., Hansen, C., Bang-Berthelsen, C. H., Garde, C., Christensen-Dalsgaard, M., Torarinsson, E., Yao, Z., Workman, C. T., Pociot, Flemming, Nielsen, Henrik, Tommerup, Niels, Ruzzo, W. L. & Gorodkin, Jan, 2017, In: Genome Research. 27, p. 1371-1383 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
- Published
Joint profiling of miRNAs and mRNAs reveals miRNA mediated gene regulation in the Göttingen minipig obesity model
Mentzel, Caroline M. Junker, Alkan, F., Keinicke, H., Jacobsen, M. J., Gorodkin, Jan, Fredholm, Merete & Cirera, Susanna, 30 Nov 2016, In: P L o S One. 11, 11, 16 p., e0167285.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 4356276
Most downloads
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2862
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Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
1377
downloads
454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
1305
downloads
Transcriptome-wide analysis of UTRs in non-small cell lung cancer reveals cancer-related genes with SNV-induced changes on RNA secondary structure and miRNA target sites
Research output: Contribution to journal › Journal article › Research › peer-review
Published