Jan Gorodkin
Professor
- 2017
- Published
Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots
Kato, Y., Gorodkin, Jan & Havgaard, Jakob Hull, Dec 2017, In: BMC Genomics. 18, 1, 935.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assessing the miRNA sponge potential of RUNX1T1 in t(8;21) acute myeloid leukemia
Junge, A., Zandi, R., Havgaard, Jakob Hull, Gorodkin, Jan & Cowland, J. B., 2017, In: Gene. 615, p. 35-40 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Associating transcription factors and conserved RNA structures with gene regulation in the human brain
Hecker, N., Seemann, Ernst Stefan, Silahtaroglu, Asli, Ruzzo, W. L. & Gorodkin, Jan, 2017, In: Scientific Reports. 7, 1, 16 p., 5776.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment
Sundfeld, D., Havgaard, Jakob Hull, Gorodkin, Jan & De Melo, A. C. M. A., 2017, Proceedings: 2017 25th Euromicro International Conference on Parallel, Distributed and Network-Based Processing, PDP 2017. IEEE, p. 295-302 8 p. 7912663Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
RAIN: RNA-protein Association and Interaction Networks
Junge, A., Refsgaard, J. C., Garde, C., Pan, X., Santos, A., Alkan, F., Anthon, Christian, von Mering, C., Workman, C. T., Jensen, Lars Juhl & Gorodkin, Jan, 2017, In: Database: The Journal of Biological Databases and Curation. 2017, 9 p., baw167.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RIsearch2: suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targets
Alkan, F., Wenzel, Anne, Palasca, Oana, Kerpedjiev, P., Rudebeck, A. F., Stadler, P. F., Hofacker, I. L. & Gorodkin, Jan, 2017, In: Nucleic Acids Research. 45, 8, 13 p., e60.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RNAscClust: Clustering RNA sequences using structure conservation and graph based motifs
Miladi, M., Junge, A., Costa, F., Seemann, Ernst Stefan, Havgaard, Jakob Hull, Gorodkin, Jan & Backofen, R., 2017, In: Bioinformatics. 33, 14, p. 2089-2096 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The identification and functional annotation of RNA structures conserved in vertebrates
Seemann, Ernst Stefan, Mirza, A. H., Hansen, C., Bang-Berthelsen, C. H., Garde, C., Christensen-Dalsgaard, M., Torarinsson, E., Yao, Z., Workman, C. T., Pociot, Flemming, Nielsen, Henrik, Tommerup, Niels, Ruzzo, W. L. & Gorodkin, Jan, 2017, In: Genome Research. 27, p. 1371-1383 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 4356276
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2862
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Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
1377
downloads
454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides
Research output: Contribution to journal › Journal article › Research › peer-review
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1305
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Transcriptome-wide analysis of UTRs in non-small cell lung cancer reveals cancer-related genes with SNV-induced changes on RNA secondary structure and miRNA target sites
Research output: Contribution to journal › Journal article › Research › peer-review
Published