RNAcentral: a hub of information for non-coding RNA sequences

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

RNAcentral : a hub of information for non-coding RNA sequences. / The RNAcentral Constortium ; Gorodkin, Jan; Seemann, Ernst Stefan.

In: Nucleic Acids Research, Vol. 47, No. D1, 2019, p. D221–D229.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

The RNAcentral Constortium , Gorodkin, J & Seemann, ES 2019, 'RNAcentral: a hub of information for non-coding RNA sequences', Nucleic Acids Research, vol. 47, no. D1, pp. D221–D229. https://doi.org/10.1093/nar/gky1034

APA

The RNAcentral Constortium , Gorodkin, J., & Seemann, E. S. (2019). RNAcentral: a hub of information for non-coding RNA sequences. Nucleic Acids Research, 47(D1), D221–D229. https://doi.org/10.1093/nar/gky1034

Vancouver

The RNAcentral Constortium , Gorodkin J, Seemann ES. RNAcentral: a hub of information for non-coding RNA sequences. Nucleic Acids Research. 2019;47(D1):D221–D229. https://doi.org/10.1093/nar/gky1034

Author

The RNAcentral Constortium ; Gorodkin, Jan ; Seemann, Ernst Stefan. / RNAcentral : a hub of information for non-coding RNA sequences. In: Nucleic Acids Research. 2019 ; Vol. 47, No. D1. pp. D221–D229.

Bibtex

@article{3f016f1f08714613827d58e2fe7b3dee,
title = "RNAcentral: a hub of information for non-coding RNA sequences",
abstract = "RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences, collating information on ncRNA sequences of all types from a broad range of organisms. We have recently added a new genome mapping pipeline that identifies genomic locations for ncRNA sequences in 296 species. We have also added several new types of functional annotations, such as tRNA secondary structures, Gene Ontology annotations, and miRNA-target interactions. A new quality control mechanism based on Rfam family assignments identifies potential contamination, incomplete sequences, and more. The RNAcentral database has become a vital component of many workflows in the RNA community, serving as both the primary source of sequence data for academic and commercial groups, as well as a source of stable accessions for the annotation of genomic and functional features. These examples are facilitated by an improved RNAcentral web interface, which features an updated genome browser, a new sequence feature viewer, and improved text search functionality. RNAcentral is freely available at https://rnacentral.org.",
author = "The RNAcentral Constortium and Jan Gorodkin and Seemann, {Ernst Stefan}",
year = "2019",
doi = "10.1093/nar/gky1034",
language = "English",
volume = "47",
pages = "D221–D229",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "D1",

}

RIS

TY - JOUR

T1 - RNAcentral

T2 - a hub of information for non-coding RNA sequences

AU - The RNAcentral Constortium

AU - Gorodkin, Jan

AU - Seemann, Ernst Stefan

PY - 2019

Y1 - 2019

N2 - RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences, collating information on ncRNA sequences of all types from a broad range of organisms. We have recently added a new genome mapping pipeline that identifies genomic locations for ncRNA sequences in 296 species. We have also added several new types of functional annotations, such as tRNA secondary structures, Gene Ontology annotations, and miRNA-target interactions. A new quality control mechanism based on Rfam family assignments identifies potential contamination, incomplete sequences, and more. The RNAcentral database has become a vital component of many workflows in the RNA community, serving as both the primary source of sequence data for academic and commercial groups, as well as a source of stable accessions for the annotation of genomic and functional features. These examples are facilitated by an improved RNAcentral web interface, which features an updated genome browser, a new sequence feature viewer, and improved text search functionality. RNAcentral is freely available at https://rnacentral.org.

AB - RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences, collating information on ncRNA sequences of all types from a broad range of organisms. We have recently added a new genome mapping pipeline that identifies genomic locations for ncRNA sequences in 296 species. We have also added several new types of functional annotations, such as tRNA secondary structures, Gene Ontology annotations, and miRNA-target interactions. A new quality control mechanism based on Rfam family assignments identifies potential contamination, incomplete sequences, and more. The RNAcentral database has become a vital component of many workflows in the RNA community, serving as both the primary source of sequence data for academic and commercial groups, as well as a source of stable accessions for the annotation of genomic and functional features. These examples are facilitated by an improved RNAcentral web interface, which features an updated genome browser, a new sequence feature viewer, and improved text search functionality. RNAcentral is freely available at https://rnacentral.org.

U2 - 10.1093/nar/gky1034

DO - 10.1093/nar/gky1034

M3 - Journal article

C2 - 30395267

VL - 47

SP - D221–D229

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - D1

ER -

ID: 210111967