The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences

Research output: Contribution to journal › Journal article › Research › peer-review

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The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences. / Seemann, Ernst Stefan; Menzel, Karl Peter; Backofen, Rolf; Gorodkin, Jan.

In: Nucleic Acids Research, Vol. 39, No. Suppl. 2, 2011, p. W107-W111.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Seemann, ES, Menzel, KP, Backofen, R & Gorodkin, J 2011, 'The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences', Nucleic Acids Research, vol. 39, no. Suppl. 2, pp. W107-W111. https://doi.org/10.1093/nar/gkr248

APA

Seemann, E. S., Menzel, K. P., Backofen, R., & Gorodkin, J. (2011). The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences. Nucleic Acids Research, 39(Suppl. 2), W107-W111. https://doi.org/10.1093/nar/gkr248

Vancouver

Seemann ES, Menzel KP, Backofen R, Gorodkin J. The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences. Nucleic Acids Research. 2011;39(Suppl. 2):W107-W111. https://doi.org/10.1093/nar/gkr248

Author

Seemann, Ernst Stefan ; Menzel, Karl Peter ; Backofen, Rolf ; Gorodkin, Jan. / The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences. In: Nucleic Acids Research. 2011 ; Vol. 39, No. Suppl. 2. pp. W107-W111.

Bibtex

@article{9bfc01928b074f80849b7b76b53f8816,
title = "The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences",
abstract = "The function of non-coding RNA genes largely depends on their secondary structure and the interaction with other molecules. Thus, an accurate prediction of secondary structure and RNA-RNA interaction is essential for the understanding of biological roles and pathways associated with a specific RNA gene. We present web servers to analyze multiple RNA sequences for common RNA structure and for RNA interaction sites. The web servers are based on the recent PET (Probabilistic Evolutionary and Thermodynamic) models PETfold and PETcofold, but add user friendly features ranging from a graphical layer to interactive usage of the predictors. Additionally, the web servers provide direct access to annotated RNA alignments, such as the Rfam 10.0 database and multiple alignments of 16 vertebrate genomes with human. The web servers are freely available at: https://rth.dk/resources/petfold/",
author = "Seemann, {Ernst Stefan} and Menzel, {Karl Peter} and Rolf Backofen and Jan Gorodkin",
year = "2011",
doi = "10.1093/nar/gkr248",
language = "English",
volume = "39",
pages = "W107--W111",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "Suppl. 2",

}

RIS

TY - JOUR

T1 - The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences

AU - Seemann, Ernst Stefan

AU - Menzel, Karl Peter

AU - Backofen, Rolf

AU - Gorodkin, Jan

PY - 2011

Y1 - 2011

N2 - The function of non-coding RNA genes largely depends on their secondary structure and the interaction with other molecules. Thus, an accurate prediction of secondary structure and RNA-RNA interaction is essential for the understanding of biological roles and pathways associated with a specific RNA gene. We present web servers to analyze multiple RNA sequences for common RNA structure and for RNA interaction sites. The web servers are based on the recent PET (Probabilistic Evolutionary and Thermodynamic) models PETfold and PETcofold, but add user friendly features ranging from a graphical layer to interactive usage of the predictors. Additionally, the web servers provide direct access to annotated RNA alignments, such as the Rfam 10.0 database and multiple alignments of 16 vertebrate genomes with human. The web servers are freely available at: https://rth.dk/resources/petfold/

AB - The function of non-coding RNA genes largely depends on their secondary structure and the interaction with other molecules. Thus, an accurate prediction of secondary structure and RNA-RNA interaction is essential for the understanding of biological roles and pathways associated with a specific RNA gene. We present web servers to analyze multiple RNA sequences for common RNA structure and for RNA interaction sites. The web servers are based on the recent PET (Probabilistic Evolutionary and Thermodynamic) models PETfold and PETcofold, but add user friendly features ranging from a graphical layer to interactive usage of the predictors. Additionally, the web servers provide direct access to annotated RNA alignments, such as the Rfam 10.0 database and multiple alignments of 16 vertebrate genomes with human. The web servers are freely available at: https://rth.dk/resources/petfold/

U2 - 10.1093/nar/gkr248

DO - 10.1093/nar/gkr248

M3 - Journal article

C2 - 21609960

VL - 39

SP - W107-W111

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - Suppl. 2

ER -

ID: 37639621