Prediction of Mannheimia haemolytica serotypes based on whole genomic sequences

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

Prediction of Mannheimia haemolytica serotypes based on whole genomic sequences. / Christensen, Henrik; Bisgaard, Magne; Menke, Theresa; Liman, Martin; Timsit, Edouard; Foster, Geoffrey; Olsen, John E.

In: Veterinary Microbiology, Vol. 262, 109232, 2021.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Christensen, H, Bisgaard, M, Menke, T, Liman, M, Timsit, E, Foster, G & Olsen, JE 2021, 'Prediction of Mannheimia haemolytica serotypes based on whole genomic sequences', Veterinary Microbiology, vol. 262, 109232. https://doi.org/10.1016/j.vetmic.2021.109232

APA

Christensen, H., Bisgaard, M., Menke, T., Liman, M., Timsit, E., Foster, G., & Olsen, J. E. (2021). Prediction of Mannheimia haemolytica serotypes based on whole genomic sequences. Veterinary Microbiology, 262, [109232]. https://doi.org/10.1016/j.vetmic.2021.109232

Vancouver

Christensen H, Bisgaard M, Menke T, Liman M, Timsit E, Foster G et al. Prediction of Mannheimia haemolytica serotypes based on whole genomic sequences. Veterinary Microbiology. 2021;262. 109232. https://doi.org/10.1016/j.vetmic.2021.109232

Author

Christensen, Henrik ; Bisgaard, Magne ; Menke, Theresa ; Liman, Martin ; Timsit, Edouard ; Foster, Geoffrey ; Olsen, John E. / Prediction of Mannheimia haemolytica serotypes based on whole genomic sequences. In: Veterinary Microbiology. 2021 ; Vol. 262.

Bibtex

@article{b8d9dc6ae2ba45df88925bd9cbe88246,
title = "Prediction of Mannheimia haemolytica serotypes based on whole genomic sequences",
abstract = "The aim of the investigation was to predict the serotypes of M. haemolytica based on whole genomic sequences with the capsular gene region as target. A total of 22 strains selected to have been serotyped and to represent all serotypes were investigated by whole genomic sequencing. The BIGSdb (Bacterial Isolate Genome Sequence Database) was downloaded and installed on a Linux server. Here the sequence database was setup with unique loci at serotype level. The server allows serotypes of M. haemolytica to be predicted from whole genomic sequences and the service is available to the public for free from https://ivsmlst.sund.root.ku.dk.",
keywords = "Bovine respiratory disease, Capsular gene region, Indirect haemagglutination, MLST, Non-typeable",
author = "Henrik Christensen and Magne Bisgaard and Theresa Menke and Martin Liman and Edouard Timsit and Geoffrey Foster and Olsen, {John E.}",
note = "Publisher Copyright: {\textcopyright} 2021 The Authors",
year = "2021",
doi = "10.1016/j.vetmic.2021.109232",
language = "English",
volume = "262",
journal = "Veterinary Microbiology",
issn = "0378-1135",
publisher = "Elsevier",

}

RIS

TY - JOUR

T1 - Prediction of Mannheimia haemolytica serotypes based on whole genomic sequences

AU - Christensen, Henrik

AU - Bisgaard, Magne

AU - Menke, Theresa

AU - Liman, Martin

AU - Timsit, Edouard

AU - Foster, Geoffrey

AU - Olsen, John E.

N1 - Publisher Copyright: © 2021 The Authors

PY - 2021

Y1 - 2021

N2 - The aim of the investigation was to predict the serotypes of M. haemolytica based on whole genomic sequences with the capsular gene region as target. A total of 22 strains selected to have been serotyped and to represent all serotypes were investigated by whole genomic sequencing. The BIGSdb (Bacterial Isolate Genome Sequence Database) was downloaded and installed on a Linux server. Here the sequence database was setup with unique loci at serotype level. The server allows serotypes of M. haemolytica to be predicted from whole genomic sequences and the service is available to the public for free from https://ivsmlst.sund.root.ku.dk.

AB - The aim of the investigation was to predict the serotypes of M. haemolytica based on whole genomic sequences with the capsular gene region as target. A total of 22 strains selected to have been serotyped and to represent all serotypes were investigated by whole genomic sequencing. The BIGSdb (Bacterial Isolate Genome Sequence Database) was downloaded and installed on a Linux server. Here the sequence database was setup with unique loci at serotype level. The server allows serotypes of M. haemolytica to be predicted from whole genomic sequences and the service is available to the public for free from https://ivsmlst.sund.root.ku.dk.

KW - Bovine respiratory disease

KW - Capsular gene region

KW - Indirect haemagglutination

KW - MLST

KW - Non-typeable

U2 - 10.1016/j.vetmic.2021.109232

DO - 10.1016/j.vetmic.2021.109232

M3 - Journal article

C2 - 34509701

AN - SCOPUS:85114705563

VL - 262

JO - Veterinary Microbiology

JF - Veterinary Microbiology

SN - 0378-1135

M1 - 109232

ER -

ID: 280056019