Veterinary Clinical Microbiology

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  1. 2023
  2. Published

    Keel bone fractures in broiler breeders: is palpation a reliable diagnostic method?

    Kittelsen, K. E., Toftaker, I., Tahamtani, F., Moe, R. O., Thoefner, Ida & Vasdal, G., 2023, In: Avian Pathology. 1, p. 78-83 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Knowledge, Attitudes, and Practices Related to Antibiotic Use and Antibiotic Resistance among Poultry Farmers in Urban and Peri-Urban Areas of Ouagadougou, Burkina Faso

    Sawadogo, A., Kagambèga, A., Moodley, Arshnee, Ouedraogo, A. A., Barro, N. & Dione, M., 2023, In: Antibiotics. 12, 1, 133.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Lesions and pathogens found in pigs that died during the nursery period in five Danish farms

    Barington, Kristiane, Eriksen, E. Ø., Kudirkiene, E., Pankoke, K., Hartmann, Katrine Top, Hansen, Mette Sif, Jensen, Henrik Elvang, Blirup-Plum, Sophie Amalie, Jørgensen, B. M., Nielsen, Jens Peter, Olsen, John Elmerdahl, Goecke, Nicole Bakkegård, Larsen, Lars & Pedersen, Ken Steen, 2023, In: Porcine Health Management. 9, 26.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    LptD depletion disrupts morphological homeostasis and upregulates carbohydrate metabolism in Escherichia coli

    Svanberg Frisinger, Frida, Jana, B., Ortiz-Marquez, J. C., Van Opijnen, T., Donadio, S. & Guardabassi, Luca, 2023, In: FEMS Microbes. 4, 10 p., xtad013.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Mannheimia cairinae sp. nov., a novel species of Mannheimia obtained from Muscovy ducks (Cairina moschata) and reclassification of Mannheimia ovis as heterotypic synonym of Mannheimia pernigra

    Bisgaard, M. & Christensen, Henrik, 2023, In: International Journal of Systematic and Evolutionary Microbiology. 73, 6, 005947.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Mass mortality among colony-breeding seabirds in the German Wadden Sea in 2022 due to distinct genotypes of HPAIV H5N1 clade 2.3.4.4b

    Pohlmann, A., Stejskal, O., King, J., Bouwhuis, S., Packmor, F., Ballstaedt, E., Hälterlein, B., Hennig, V., Stacker, L., Graaf, A., Hennig, C., Günther, A., Liang, Yuan, Hjulsager, C., Beer, M. & Harder, T., 2023, In: The Journal of general virology. 104, 4

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Multiplex Real-Time RT-PCR Assays for Detection and Differentiation of Porcine Enteric Coronaviruses

    Lazov, Christina Marie, Papetti, A., Belsham, Graham John, Bøtner, A., Rasmussen, T. B. & Boniotti, M. B., 2023, In: Pathogens. 12, 8, 1040.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Neomycin resistance in clinical Escherichia coli from Danish weaner pigs is associated with recent neomycin use and presence of F4 or F18 fimbriaes

    Subramani, P., Pirolo, Mattia, Haugegaard, S., Skarbye, Alice Puk, Conrady, Beate, Pedersen, Ken Steen, Guardabassi, Luca & Damborg, Peter Panduro, 2023, In: Preventive Veterinary Medicine. 212, p. 105852

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    One Health WASH: an AMR-smart integrative approach to preventing and controlling infection in farming communities

    Pinto Jimenez, C. E., Keestra, S. M., Tandon, P., Pickering, A. J., Moodley, Arshnee, Cumming, O. & Chandler, C. I. R., 2023, In: BMJ Global Health. 8, 3, e011263.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  11. Published

    P50 | Abundance and diversity of the fecal resistome in small‐holder broiler systems in Kenya

    Njaramba, J. K., Antonissen, G., Muloi, D. M., Ochieng, L. A., Ibayi, E. L. & Moodley, Arshnee, 2023, In: Journal of Veterinary Pharmacology and Therapeutics. 46, S1, p. 109-110 2 p., P50.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  12. Published

    Phenotypic and genotypic antimicrobial resistance correlation and plasmid characterization in Salmonella spp. isolates from Italy reveal high heterogeneity among serovars

    Petrin, S., Orsini, M., Massaro, A., Olsen, John Elmerdahl, Barco, L. & Losasso, C., 2023, In: Frontiers in Public Health. 11, 13 p., 1221351.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Pilot testing the EARS-Vet surveillance network for antibiotic resistance in bacterial pathogens from animals in the EU/EEA

    Lagrange, J., Amat, J. P., Ballesteros, C., Damborg, P., Grönthal, T., Haenni, M., Jouy, E., Kaspar, H., Kenny, K., Klein, B., Lupo, A., Madec, J. Y., Salomonsen, C. M., Müller, E., Madero, C. M., Nilsson, O., Norström, M., Nykäsenoja, S., Overesch, G., Pedersen, K. & 10 others, Pohjanvirta, T., Slowey, R., Justo, C. T., Urdahl, A. M., Zafeiridis, C., Zini, E., Cazeau, G., Jarrige, N., Collineau, L. & on behalf of the EARS-Vet network, O. B. O. T. E. N., 2023, In: Frontiers in Microbiology. 14, 1188423.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Polymyxin B inhibits pro-inflammatory effects of E. coli outer membrane vesicles whilst increasing immune cell uptake and clearance

    Whitehead, B., Antennuci, F., Boysen, A. T. & Nejsum, P., 2023, In: Journal of Antibiotics. 76, p. 360–364

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Post-weaning diarrhea in pigs from a single Danish production herd was not associated with the pre-weaning fecal microbiota composition and diversity

    Rydal, Martin Peter, Gambino, Michela, Castro-Mejia, J. L., Poulsen, Louise Ladefoged, Jørgensen, Claus Bøttcher & Nielsen, Jens Peter, 2023, In: Frontiers in Microbiology. 14, 1108197.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Potential for Introduction of African Swine Fever Virus into High-Biosecurity Pig Farms by Flying Hematophagous Insects

    Stelder, J. J., Olesen, A. S., Belsham, Graham John, Rasmussen, T. B., Botner, A., Kjær, Lene Jung, Boklund, Anette & Bødker, René, 2023, In: Transboundary and Emerging Diseases. 2023, 15 p., 8787621.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Practices and drivers for antibiotic use in cattle production systems in Kenya

    Kisoo, L., Muloi, D. M., Oguta, W., Ronoh, D., Kirwa, L., Akoko, J., Fèvre, E. M., Moodley, Arshnee & Wambua, L., 2023, In: One Health. 17, 10 p., 100646.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Prevalence and risk factors associated with the occurrence of Campylobacter sp. in children aged 6–24 months in peri-urban Nairobi, Kenya

    Kiarie, A., Bebora, L., Gitao, G., Ochien’g, L., Okumu, N., Mutisya, C., Wasonga, J., Masudi, S. P., Moodley, Arshnee, Amon-Tanoh, M. A., Watson, J., Cumming, O. & Cook, E. A. J., 2023, In: Frontiers in Public Health. 11, 9 p., 1147180.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Prevalence and types of extended-spectrum β-lactamase-producing bacteria in retail seafood

    Pearce, R., Conrady, Beate & Guardabassi, Luca, 2023, In: Foods. 12, 16, 3033.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Prevalence and whole genome phylogenetic analysis reveal genetic relatedness between antibiotic resistance Salmonella in hatchlings and older chickens from farms in Nigeria

    Jibril, A. H., Okeke, I. N., Dalsgaard, Anders & Olsen, John Elmerdahl, 2023, In: Poultry Science. 102, 3, 102427.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Prevalence of Potential Pathogenic and Antimicrobial Resistant Escherichia coli in Danish Broilers

    Poulsen, Louise Ladefoged, Bisgaard, M. & Christensen, Henrik, 2023, In: Antibiotics. 12, 2, 344.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Quality of MALDI-TOF mass spectra in routine diagnostics: results from an international external quality assessment including 36 laboratories from 12 countries using 47 challenging bacterial strains

    Cuénod, A., Aerni, M., Bagutti, C., Bayraktar, B., Boz, E. S., Carneiro, C. B., Casanova, C., Coste, A. T., Damborg, P., van Dam, D. W., Demirci, M., Drevinek, P., Dubuis, O., Fernandez, J., Greub, G., Hrabak, J., Hürkal Yiğitler, G., Hurych, J., Jensen, T. G., Jost, G. & 28 others, Kampinga, G. A., Kittl, S., Lammens, C., Lang, C., Lienhard, R., Logan, J., Maffioli, C., Mareković, I., Marschal, M., Moran-Gilad, J., Nolte, O., Oberle, M., Pedersen, M., Pflüger, V., Pranghofer, S., Reichl, J., Rentenaar, R. J., Riat, A., Rodríguez-Sánchez, B., Schilt, C., Schlotterbeck, A. K., Schrenzel, J., Troib, S., Willems, E., Wootton, M., Ziegler, D., Egli, A. & for the ESGMD study group, F. T. E. S. G., 2023, In: Clinical Microbiology and Infection. 29, 2, p. 190-199

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Quality of amoxicillin/clavulanic acid oral formulations for intended veterinary use in the UK, Malaysia, Serbia and Thailand

    Pelligand, L., Baker, D., Sivagurunathan, A., Kovačević, Z., Suemanotham, N., Stair, J. L., Scott, M., Liu, F., Page, S. W., Guardabassi, Luca, Steagall, P. V. & The Therapeutic Guidelines Group of the World Small Animal Veterinary Association, T. T. G. G. O. T. W. S. A. V. A., 2023, In: Journal of Small Animal Practice. 64, 10, p. 626–634

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Quinolone Resistance in Gallibacterium anatis Determined by Mutations in Quinolone Resistance-Determining Region

    Villumsen, Kasper Rømer, Allahghadry, T., Karwańska, M., Frey, J. & Bojesen, Anders Miki, 2023, In: Antibiotics. 12, 5, 903.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Rethinking the Inoculum Used in Animal Models of Implant-Associated Osteomyelitis – The Formation and Application of Bacterial Aggregates

    Hartmann, Katrine Top, Nielsen, R. L., Mikkelsen, F. C., Ingmer, Hanne, Kvich, Lasse Andersson, Aalbæk, Bent, Odgaard, Anders, Jensen, Henrik Elvang, Lichtenberg, Mads, Bjarnsholt, Thomas & Jensen, Louise Kruse, 2023, p. 59. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  26. Published

    Risk Factors, Genetic Diversity, and Antimicrobial Resistance of Staphylococcus spp. Isolates in Dogs Admitted to an Intensive Care Unit of a Veterinary Hospital

    Santana, J. A., Paraguassu, A. O., Santana, R. S. T., Xavier, R. G. C., Freitas, P. M. C., Aburjaile, F. F., Azevedo, V. A. D. C., Brenig, B., Bojesen, Anders Miki & Silva, R. O. S., 2023, In: Antibiotics. 12, 3, 621.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Safety and efficacy of a feed additive consisting of l-valine produced by Corynebacterium glutamicum CGMCC 18932 for all animal species (Xinjiang Fufeng Biotechnologies Co., Ltd.)

    Bampidis, V., Azimonti, G., Bastos, M. D. L., Christensen, H., Durjava, M., Dusemund, B., Kouba, M., López-Alonso, M., Puente, S. L., Marcon, F., Mayo, B., Pechová, A., Petkova, M., Sanz, Y., Sanz, Y., Villa, R. E., Woutersen, R., Herman, L., Anguita, M., Tarrés-Call, J. & 2 others, Firmino, J. P. & EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), E. P. O. A. A. P. O. S. U. I. A. F. (., 2023, In: EFSA Journal. 21, 7, e08104.

    Research output: Contribution to journal › Journal article › Research

  28. Published

    Safety and efficacy of a feed additive consisting of β-mannanase produced by Aspergillus niger CBS 120604 (Nutrixtend Optim) for use in all poultry for fattening (Kerry Ingredients & Flavours Ltd)

    Bampidis, V., Azimonti, G., Bastos, M. D. L., Christensen, H., Dusemund, B., Durjava, M., Kouba, M., López-Alonso, M., López Puente, S., Marcon, F., Mayo, B., Pechová, A., Petkova, M., Sanz, Y., Sanz, Y., Villa, R. E., Woutersen, R., Martelli, G., Tosti, L., Anguita, M. & 4 others, García-Cazorla, Y., Pettenati, E., Ortuño, J. & EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP Panel), E. P. A. A. P. O. S. U. I. A. F. (. P., 2023, In: EFSA Journal. 21, 6, e08045.

    Research output: Contribution to journal › Journal article › Research

  29. Published

    Sygdomsbekæmpelse gennem 250 år

    Houe, Hans, Bojesen, Anders Miki & Nørrung, Birgit, 2023, In: Dansk Veterinaertidsskrift. 2023, 4, p. 18-23

    Research output: Contribution to journal › Journal article › Communication

  30. Published

    The 2023 World Small Animal Veterinary Association (WSAVA): List of essential medicines for cats and dogs

    Steagall, P. V., Pelligand, L., Page, S., Granick, J. L., Allerton, F., Bęczkowski, P. M., Weese, J. S., Hrček, A. K., Queiroga, F. & Guardabassi, Luca, 2023, In: Journal of Small Animal Practice. 64, 12, p. 731-748 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    The egg-laying process might be a contributing factor for the development of keel bone fractures in laying hens

    Thoefner, Ida , Shih, C., Villa, Chiara & Christensen, Jens Peter, 2023, XXIInd Congress of the World Veterinary Poultry Association: Book of Abstracts. Verona, Italy: World Veterinary Poultry Association, p. 228-228 1 p. S9-O2

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research › peer-review

  32. Published

    The global transcriptomes of Salmonella enterica serovars Gallinarum, Dublin and Enteritidis in the avian host

    Fei, Xiao, Schroll, C., Huang, K., Christensen, Jens Peter, Christensen, Henrik, Lemire, S., Kilstrup, M., Thomsen, Line Elnif, Jelsbak, L. & Olsen, John Elmerdahl, 2023, In: Microbial Pathogenesis. 182, 106236.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    The hygienic aspects in the management of strangles

    Fridberg, A., Adler, Ditte Marie Top, Jørgensen, M. G. & Olsen, Rikke Heidemann, 2023, In: Equine Veterinary Education. 35, 10, p. 540-550

    Research output: Contribution to journal › Review › Research › peer-review

  34. Published

    Unbiased Virus Detection in a Danish Zoo Using a Portable Metagenomic Sequencing System

    Fomsgaard, A. S., Tahas, S. A., Spiess, Katja, Polacek, C., Fonager, J. & Belsham, Graham John, 2023, In: Viruses. 15, 6, 1399.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Uncovering the Important Genetic Factors for Growth during Cefotaxime-Gentamicin Combination Treatment in blaCTX-M-1 Encoding Escherichia coli

    Alobaidallah, M. S. A., García, V., De Mets, R., Wellner, Sandra Marina, Thomsen, Line Elnif, Herrero-Fresno, A. & Olsen, John Elmerdahl, 2023, In: Antibiotics. 12, 6, 24 p., 993.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Uptake and Survival of African Swine Fever Virus in Mealworm (Tenebrio molitor) and Black Soldier Fly (Hermetia illucens) Larvae

    Olesen, A. S., Lazov, Christina Marie, Lecocq, Antoine, Accensi, F., Jensen, Annette Bruun, Lohse, L., Rasmussen, T. B., Belsham, Graham John & Bøtner, A., 2023, In: Pathogens. 12, 15 p., 47.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Usage of Antimicrobials in Equine Veterinary Practice in Denmark – A Case-Based Survey

    Jacobsen, A. B. J. E., Damborg, Peter Panduro & Hopster-Iversen, Charlotte, 2023, In: Journal of Equine Veterinary Science. 126, 104267.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Using surveillance data for early warning modelling of highly pathogenic avian influenza in Europe reveals a seasonal shift in transmission, 2016-2022: [Inkl. correction]

    Kjær, Lene Jung, Ward, M. P., Boklund, Anette, Larsen, Lars, Hjulsager, C. K. & Kirkeby, Carsten, 2023, In: Scientific Reports. 13, 16 p., 15396.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Welfare-related causes of mortality identified in a longitudinal study in Danish commercial layers

    Lund, Vibe Pedersen, Thoefner, Ida , Scharling, F. S., Nielsen, Liza Rosenbaum & Christensen, Jens Peter, 2023, p. 82.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  40. Published

    Whole strains vs MGEs in short and longterm transmission of ESBL genes between healthcare and community settings in Uganda

    Hounmanou, Yaovi Mahuton Gildas, Wanyana, A., Alafi, S., Wabwire-mangen, F., Christensen, Henrik, Olsen, John Elmerdahl & Byarugaba, D. K., 2023, In: Scientific Reports. 13, 10229.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Zoonotic Transmission of Antimicrobial-Resistant Enterococci: A Threat to Public Health or an Overemphasized Risk?

    Bortolaia, V. & Guardabassi, Luca, 2023, Zoonoses: Infections Affecting Humans and Animals. Sing, A. (ed.). 2 ed. Springer, p. 579-610

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  42. 2022
  43. Published

    Pseudo-blackleg - en pendant til klassisk miltbrandsemfysem

    Becker, Cecilie Brandt, Petersen, H. H., Damborg, Peter Panduro & Jensen, Henrik Elvang, 1 Sep 2022, In: Dansk Veterinaertidsskrift. 2022, 9

    Research output: Contribution to journal › Journal article › Communication

  44. Published

    Risk factors of avian influenza in Danish poultry and wild birds during the epidemic waves from June 2020 to May 2021

    Liu, Yangfan, Kjær, Lene Jung, Boklund, Anette, Hjulsager, C. K., Larsen, Lars & Kirkeby, Carsten, 8 Aug 2022.

    Research output: Contribution to conference › Poster › Research

  45. Published

    Lung lesions in pigs challenged with pre-pandemic, swine-adapted and human-adapted influenza A H1N1pdm09 viruses

    Kristensen, Charlotte, 16 Jun 2022.

    Research output: Contribution to conference › Conference abstract for conference › Communication

  46. Published

    Quantification of antimicrobial usage in Danish poultry production in 2015-2019

    Lund, Vibe Pedersen, Thoefner, Ida , Nielsen, Liza Rosenbaum & Christensen, Jens Peter, 5 May 2022.

    Research output: Contribution to conference › Poster › Research › peer-review

  47. Published

    Using national avian influenza data to predict spatial patterns in wild birds from Denmark, 2006-2020

    Kjær, Lene Jung, Boklund, Anette, Larsen, Lars, Hjulsager, C. K. & Ward, M. P., 3 May 2022.

    Research output: Contribution to conference › Conference abstract for conference › Research

  48. Published

    Single cell mapping the evolution of the spatial processing centre within the brain

    Ralbovszki, Dorottya Maria, Bertelsen, Mads Frost, Buchmann, Kurt, Mori, Yuki, Gorodkin, Jan, Hemberg, M., Seemann, Ernst Stefan, Khodosevich, Konstantin & Hall, Vanessa Jane, 1 May 2022.

    Research output: Contribution to conference › Poster › Communication

  49. Published

    Forecasting outbreaks of high pathogenic avian influenza in Europe

    Kjær, Lene Jung, Boklund, Anette, Larsen, Lars, Hjulsager, C. K., Ward, M. P. & Kirkeby, Carsten, 23 Mar 2022.

    Research output: Contribution to conference › Conference abstract for conference › Research

  50. Published

    Salmonella Salamae and S. Waycross isolated from Nile perch in Lake Victoria show limited human pathogenic potential

    Hounmanou, Yaovi Mahuton Gildas, Baniga, Z., García, V. & Dalsgaard, Anders, 2022, In: Scientific Reports. 12, 11 p., 4229.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    A Meta-Analysis to Estimate Prevalence of Resistance to Tetracyclines and Third Generation Cephalosporins in Enterobacteriaceae Isolated from Food Crops

    Brunn, A. A., Roustit, M., Kadri-Alabi, Z., Guardabassi, Luca & Waage, J., 2022, In: Antibiotics. 11, 10, 1424.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    A Multi-Laboratory Comparison of Methods for Detection and Quantification of African Swine Fever Virus

    Olesen, A. S., Rasmussen, T. B., Nielsen, Søren Saxmose, Belsham, Graham John, Boklund, Anette, Ploegaert, T., Moonen-Leusen, B., Blome, S. & Bøtner, A., 2022, In: Pathogens. 11, p. 1-14 14 p., 325.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta)

    Palmada-Flores, M., Orkin, J. D., Haase, B., Mountcastle, J., Bertelsen, Mads Frost, Fedrigo, O., Kuderna, L. F. K., Jarvis, E. D. & Marques-Bonet, T., 2022, In: GigaScience. 11, giac026.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)

    Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Ernst, M., Hansen, M., Forberg, T., Gopalakrishnan, Shyam, Gilbert, M Thomas P, Bojesen, Anders Miki, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2022, In: Microbiome. 10, 19 p., 21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    ANTIBACTERIAL EFFECTS OF SINGLE AND COMBINED CRUDE EXTRACTS OF SYNADENIUM GLAUCESCENS AND COMMIPHORA SWYNNERTONII

    Ochollah, G. M., Msengwa, S. Z., Mabiki, P. F., Kusiluka, J. M. L., Mdegela, H. R. & Olsen, John Elmerdahl, 2022, In: African Journal of Infectious Diseases. 16, 2, p. 9-16 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Addressing a Rule of Thumb: Modeling the Effects of Meteorological Conditions on Prescription of Antimicrobials in Aquaculture

    Villumsen, Kasper Rømer & Bojesen, Anders Miki, 2022, In: Microbiology Spectrum. 10, 5, 14 p., e0175222.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Airborne environmental DNA for terrestrial vertebrate community monitoring

    Lynggaard, Christina Islas, Bertelsen, Mads Frost, Jensen, Casper Vindahl, Johnson, Matthew Stanley, Frøslev, Tobias Guldberg, Olsen, Morten Tange & Bohmann, Kristine, 2022, In: Current Biology. 32, 3, p. 701-707.e5 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Antibiotic resistance and polymyxin B resistance mechanism of Aeromonas spp. isolated from yellow catfish, hybrid snakeheads and associated water from intensive fish farms in Southern China

    Li, L., Yao, R., Olsen, Rikke Heidemann, Zhang, Y. & Meng, H., 2022, In: LWT. 166, 113802.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Antimicrobial-induced horizontal transfer of antimicrobial resistance genes in bacteria: a mini-review

    Liu, G., Thomsen, Line Elnif & Olsen, John Elmerdahl, 2022, In: The Journal of antimicrobial chemotherapy. 77, 3, p. 556-567 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  60. Published

    Anvendelse af probiotika før klækning

    Poulsen, Louise Ladefoged, Sandvang, D., Dencker, M., Juul, J. & Thoefner, Ida , 2022, In: Dansk Erhvervsfjerkrae. 51, 3, p. 62-65 4 p.

    Research output: Contribution to journal › Journal article › Research

  61. Published

    Assessment of animal diseases caused by bacteria resistant to antimicrobials: kept fish species

    EFSA Panel on Animal Health and Welfare, Nielsen, S. S., Bicout, D. J., Calistri, P., Canali, E., Drewe, J. A., Garin-Bastuji, B., Gonzales Rojas, J. L., Gortazar Schmidt, C., Herskin, M., Michel, V., Miranda Chueca, M. A., Padalino, B., Pasquali, P., Roberts, H. C., Spoolder, H., Stahl, K., Velarde, A., Viltrop, A., Winckler, C. & 9 others, Dewulf, J., Guardabassi, Luca, Hilbert, F., Mader, R., Romalde, J. L., Smith, P., Baldinelli, F., Kohnle, L. & Alvarez, J., 2022, In: EFSA Journal. 20, 2, p. 1-23 23 p., e07076.

    Research output: Contribution to journal › Journal article › Research

  62. Published

    Assessment of automated assays for serum amyloid A, haptoglobin (PIT54) and basic biochemistry in broiler breeders experimentally infected with Escherichia coli

    Kromann, Sofie, Olsen, Rikke Heidemann, Bojesen, Anders Miki, Jensen, Henrik Elvang & Thoefner, Ida , 2022, In: Veterinary Research. 53, 1, 7 p., 25.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Assessment of the feed additive consisting of Lactiplantibacillus plantarum (formerly Lactobacillus plantarum) NCIMB 30236 for all animal species for the renewal of its authorisation (BioCC OÜ)

    EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), E. P. O. A. A. P. O. S. U. I. A. F. (., 2022, In: EFSA Journal. 20, 3, e07149.

    Research output: Contribution to journal › Journal article › Research

  64. Published

    Assessment of the feed additive consisting of Lactococcus lactis NCIMB 30117 for all animal species for the renewal of its authorisation (Chr. Hansen A/S)

    Bampidis, V., Azimonti, G., Bastos, M. D. L., Christensen, H., Dusemund, B., Fašmon Durjava, M., Kouba, M., López-Alonso, M., López Puente, S., Marcon, F., Mayo, B., Pechová, A., Petkova, M., Ramos, F., Sanz, Y., Villa, R. E., Woutersen, R., Saarela, M., Brozzi, R., Galobart, J. & 3 others, Gregoretti, L., Revez, J. & EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), E. P. O. A. A. P. O. S. U. I. A. F. (., 2022, In: EFSA Journal. 20, 4, e07243.

    Research output: Contribution to journal › Journal article › Research

  65. Published

    Assessment of the feed additive consisting of Lactococcus lactis DSM 11037 for all animal species for the renewal of its authorisation (Chr. Hansen A/S)

    EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), E. P. O. A. A. P. O. S. U. I. A. F. (., 2022, In: EFSA Journal. 20, 4, e07241.

    Research output: Contribution to journal › Journal article › Research

  66. Published

    Assessment of the feed additive consisting of Lactococcus lactis NCIMB 30160 for all animal species for the renewal of its authorisation (Lactosan GmbH & Co KG)

    EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), E. P. O. A. A. P. O. S. U. I. A. F. (., 2022, In: EFSA Journal. 20, 1, e06975.

    Research output: Contribution to journal › Journal article › Research

  67. Published

    Assessment of the feed additive consisting of Lentilactobacillus buchneri (formerly Lactobacillus buchneri) DSM 12856 for all animal species for the renewal of its authorisation (Lactosan GmbH & Co KG)

    EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), E. P. O. A. A. P. O. S. U. I. A. F. (., 2022, In: EFSA Journal. 20, 2, e07148.

    Research output: Contribution to journal › Journal article › Research

  68. Published

    Association between Antibiotic Consumption and Resistance in Mink Production

    Nikolaisen, Nanett Kvist, Fertner, M., Lassen, D. C. K., Chehabi, C. N., Ronaghinia, A. A., Chriél, M., Jensen, V. F., Jensen, L. B., Pedersen, K. & Struve, T., 2022, In: Antibiotics. 11, 7, 927.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Characteristics and Global Occurrence of Human Pathogens Harboring Antimicrobial Resistance in Food Crops: A Scoping Review

    Brunn, A., Kadri-Alabi, Z., Moodley, Arshnee, Guardabassi, Luca, Taylor, P., Mateus, A. & Waage, J., 2022, In: Frontiers in Sustainable Food Systems. 6, 824714.

    Research output: Contribution to journal › Review › Research › peer-review

  70. Published

    Characterization of Influenza D Virus in Danish Calves

    Goecke, Nicole Bakkegård, Liang, Yuan, Dam Otten, Nina, Hjulsager, C. K. & Larsen, Lars, 2022, In: Viruses. 14, 2, 423.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Characterization of extended-spectrum cephalosporins and fluoroquinolone resistance of a Salmonella enterica serovar Thompson isolate from ready-to-eat pork product in China

    Li, L., Olsen, Rikke Heidemann, Xiao, J., Liang, M., Meng, H. & Peng, S., 2022, In: Frontiers in Microbiology. 13, 964009.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Characterization of Escherichia coli and other bacteria isolated from condemned broilers at a Danish abattoir

    Alfifi, Ahmed Eassa H, Christensen, Jens Peter, Hounmanou, Yaovi Mahuton Gildas, Sandberg, M. & Dalsgaard, Anders, 2022, In: Frontiers in Microbiology. 13, 13 p., 1020586.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Clarification of large-volume bacterial cultures using a centrifuge-free protocol

    Allahghadry, T., Bojesen, Anders Miki, Whitehead, B. J. & Antenucci, F., 2022, In: Journal of Applied Microbiology. 133, 2, p. 870-882

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Coating of bone implants with silica, hyperbranched polyethyleneimine, and gentamicin prevents development of osteomyelitis in a porcine model

    Jensen, L. K., Jensen, H. E., Blirup-Plum, S. A., Bue, M., Hanberg, P., Kvich, L., Aalbæk, B., López, Y., Soto, S. M., Douloudi, M., Papageorgiou, M., Nikoli, E., Arkas, M., Gutiérrez-del-Río, I., López-Ibáñez, S., Villar, C. J., Lombó, F., Gkomoza, P., Kitsou, I., Tsetsekou, A. & 1 others, Vardavoulias, M., 2022, In: Materialia. 24, 101473.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Comparative genomic analysis reveals new evidence of genus boundary for family Iridoviridae and explores qualified hallmark genes

    Zhao, R., Gu, C., Zou, X., Zhao, M., Xiao, W., He, M., He, L., Yang, Q., Geng, Y. & Yu, Z., 2022, In: Computational and Structural Biotechnology Journal. 20, p. 3493-3502 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Cortical Morphology and White Matter Tractography of Three Phylogenetically Distant Primates: Evidence for a Simian Elaboration

    Roumazeilles, L., Lange, F. J., Benn, R. A., Andersson, J. L. R., Bertelsen, Mads Frost, Manger, P. R., Flach, E., Khrapitchev, A. A., Bryant, K. L., Sallet, J. & Mars, R. B., 2022, In: Cerebral Cortex. 32, 8, p. 1608–1624 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    DEVELOPMENT OF A QUANTITATIVE IMMUNOASSAY FOR SERUM HAPTOGLOBIN AS A PUTATIVE DISEASE MARKER IN THE SOUTHERN WHITE RHINOCEROS (CERATOTHERIUM SIMUM SIMUM)

    Petersen, H. H., Stenbak, R., Blaabjerg, C., Krogh, Anne Kirstine Havnsøe, Bertelsen, Mads Frost, Buss, P. & Heegaard, P. M. H., 2022, In: Journal of Zoo and Wildlife Medicine. 53, 1, p. 141-152 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Defining the scope of the European Antimicrobial Resistance Surveillance network in Veterinary medicine (EARS-Vet): a bottom-up and One Health approach

    EU-JAMRAI, E., 2022, In: The Journal of antimicrobial chemotherapy. 77, 3, p. 816-826 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Development of a duplex qPCR for the differentiation of a live attenuated Escherichia coli aroA mutant vaccine strain from field isolates in chickens

    Leurs, K., Goossens, E., Christensen, Henrik, Mainil, J. G., Vancraeynest, D., Ducatelle, R. & Van Immerseel, F., 2022, In: PLoS ONE. 17, 13 p., e0278949.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Disease control tools to secure animal and public health in a densely populated world

    Charlier, J., Barkema, H. W., Becher, P., De Benedictis, P., Hansson, I., Hennig-Pauka, I., La Ragione, R., Larsen, Lars, Madoroba, E., Maes, D., Marin, C. M., Mutinelli, F., Nisbet, A. J., Podgorska, K., Vercruysse, J., Vitale, F., Williams, D. J. L. & Zadoks, R. N., 2022, In: The Lancet Planetary Health. 6, 10, p. E812-E824 13 p.

    Research output: Contribution to journal › Review › Research › peer-review

  81. Published

    Effect of pH and Salinity on the Ability of Salmonella Serotypes to Form Biofilm

    Petrin, S., Mancin, M., Losasso, C., Deotto, S., Olsen, John Elmerdahl & Barco, L., 2022, In: Frontiers in Microbiology. 13, 821679.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Efficacy of a feed additive consisting of endo-1,4-beta-xylanase produced by Trichoderma citrinoviride (IMI SD 135) (HOSTAZYM® X) for sows in order to have benefits in piglets (Huvepharma NV)

    EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), E. P. O. A. A. P. O. S. U. I. A. F. (., 2022, In: EFSA Journal. 20, 3, e07154.

    Research output: Contribution to journal › Journal article › Research

  83. Published

    Efficacy of natural antimicrobial peptides versus peptidomimetic analogues: a systematic review

    Hellewell, L., Gilani, N. M., Stanton, C. J., Pelligand, L., Franzyk, Henrik, Guardabassi, Luca & Good, L., 2022, In: Future Medicinal Chemistry. 14, 24, p. 1899–1921

    Research output: Contribution to journal › Review › Research › peer-review

  84. Published

    Emergence of methicillin resistance predates the clinical use of antibiotics

    Larsen, J., Raisen, C. L., Ba, X., Sadgrove, N. J., Padilla-González, G. F., Simmonds, M. S. J., Loncaric, I., Kerschner, H., Apfalter, P., Hartl, R., Deplano, A., Vandendriessche, S., Černá Bolfíková, B., Hulva, P., Arendrup, M. C., Hare, R. K., Barnadas, C., Stegger, M., Sieber, R. N., Skov, R. L. & 44 others, Petersen, A., Angen, Ø., Rasmussen, S. L., Espinosa-Gongora, C., Aarestrup, F. M., Lindholm, L. J., Nykäsenoja, S. M., Laurent, F., Becker, K., Walther, B., Kehrenberg, C., Cuny, C., Layer, F., Werner, G., Witte, W., Stamm, I., Moroni, P., Jørgensen, H. J., de Lencastre, H., Cercenado, E., García-Garrote, F., Börjesson, S., Hæggman, S., Perreten, V., Teale, C. J., Waller, A. S., Pichon, B., Curran, M. D., Ellington, M. J., Welch, J. J., Peacock, S. J., Seilly, D. J., Morgan, F. J. E., Parkhill, J., Hadjirin, N. F., Lindsay, J. A., Holden, M. T. G., Edwards, G. F., Foster, G., Paterson, G. K., Didelot, X., Holmes, M. A., Harrison, E. M. & Larsen, A. R., 2022, In: Nature. 602, p. 135–141

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Engineering a CRISPR interference system targeting AcrAB-TolC efflux pump to prevent multidrug resistance development in Escherichia coli

    Wan, X., Li, Q., Olsen, Rikke Heidemann, Meng, H., Zhang, Z., Wang, J., Zheng, H., Li, L. & Shi, L., 2022, In: The Journal of antimicrobial chemotherapy. 77, 8, p. 2158-2166 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Epidemiological Prevalence of Phenotypical Resistances and Mobilised Colistin Resistance in Avian Commensal and Pathogenic E. coli from Denmark, France, The Netherlands, and the UK

    Mead, A., Billon-Lotz, C., Olsen, Rikke Heidemann, Swift, B., Richez, P., Stabler, R. & Pelligand, L., 2022, In: Antibiotics. 11, 5, 631.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Estimating transmission dynamics of African swine fever virus from experimental studies

    Main, A. R., Halasa, T., Olesen, A. S., Lohse, L., Rasmussen, T. B., Belsham, Graham John, Boklund, Anette, Bøtner, A. & Christiansen, L. E., 2022, In: Transboundary and Emerging Diseases. 69, 6, p. 3858-3867

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Evaluation of a novel multiplex qPCR method for rapid detection and quantification of pathogens associated with calf diarrhoea

    Pansri, P., Svensmark, B., Liu, G., Thamsborg, Stig Milan, Kudirkiene, E., Nielsen, H. V., Goecke, Nicole Bakkegård & Olsen, John Elmerdahl, 2022, In: Journal of Applied Microbiology. 133, 4, p. 2516-2527

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Evaluation of the diagnostic performance of a commercially available point-of-care test for post weaning diarrhoea in pigs-a pilot study

    Jakobsen, Nadia, Goecke, Nicole Bakkegård & Pedersen, Ken Steen, 2022, In: Porcine Health Management. 8, 49.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Experimental Infection of Pigs with Recent European Porcine Epidemic Diarrhea Viruses

    Lazov, Christina Marie, Lohse, L., Belsham, Graham John, Rasmussen, T. B. & Bøtner, A., 2022, In: Viruses. 14, 12, 2751.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Experimental Infections of Pigs with African Swine Fever Virus (Genotype II); Studies in Young Animals and Pregnant Sows

    Lohse, L., Nielsen, J., Uttenthal, Å., Olesen, A. S., Strandbygaard, B., Rasmussen, T. B., Belsham, Graham John & Bøtner, A., 2022, In: Viruses. 14, 7, 1387.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Experimental infection of high health pigs with porcine circovirus type 2 (PCV2) and Lawsonia intracellularis

    Hansen, Mette Sif, Jensen, T. K., Hjulsager, C. K., Angen, Ø., Riber, U., Nielsen, J., Heegaard, P. M. H. & Larsen, Lars, 2022, In: Frontiers in Veterinary Science. 9, 994147.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Exploring the resistome, virulome, mobilome and microbiome along pork production chain using metagenomics

    Li, L., Xiao, Y., Wang, C., Olsen, Rikke Heidemann, Meng, H. & Shi, L., 2022, In: International Journal of Food Microbiology. 371, 109674.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Fecal Shedding of Multidrug Resistant Escherichia coli Isolates in Dogs Fed with Raw Meat-Based Diets in Brazil

    Ramos, C. P., Kamei, C. Y. I., Viegas, F. M., de Melo Barbieri, J., Cunha, J. L. R., Hounmanou, Yaovi Mahuton Gildas, Coura, F. M., Santana, J. A., Lobato, F. C. F., Bojesen, Anders Miki & Silva, R. O. S., 2022, In: Antibiotics. 11, 4, 534.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Fine-regulation of myosin relaxed states in vertebrate muscle

    Thomsen, Elise Julie Melhedegaard, Sonne, A., Bertelsen, Mads Frost, Vermeulen, E., Ganswindt, A., Wang, T. & Ochala, Julien, 2022, In: FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 36

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Fugleinfluenza (Aviær Influenzavirus)

    Larsen, Lars & Trebbien, R., 2022, Risikovurdering af zoonotiske virus og andre agens, der kan forekomme i dyr og kan have epidemisk potentiale. Bødker, R., Kjær, L. J., Jokelainen, P., Trebbien, R., Boklund, A. & Larsen, L. E. (eds.). Københavns Universitet, p. 21-28 7 p.

    Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research

  97. Published

    GENOMIC CHARACTERIZATION OF MULTIDRUG-RESISTANT EXTENDED-SPECTRUM β-LACTAMASE-PRODUCING ESCHERICHIA COLI AND KLEBSIELLA PNEUMONIAE FROM CHIMPANZEES (PAN TROGLODYTES) FROM WILD AND SANCTUARY LOCATIONS IN UGANDA

    Bager, S. L., Kakaala, I., Kudirkiene, E., Byarugaba, D. K. & Olsen, John Elmerdahl, 2022, In: Journal of Wildlife Diseases. 58, 2, p. 269-278 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Garlic-Derived Metabolites Exert Antioxidant Activity, Modulate Gut Microbiota Composition and Limit Citrobacter rodentium Infection in Mice

    Zhu, L., Andersen-Civil, A. I. S., Castro-Meija, J. L., Nielsen, Dennis Sandris, Blanchard, A., Olsen, John Elmerdahl, Thamsborg, Stig Milan & Williams, Andrew Richard, 2022, In: Antioxidants. 11, 10, 14 p., 2033.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Genetic context of blaCTX–M–55 and qnrS1 genes in a foodborne Salmonella enterica serotype Saintpaul isolate from China

    Li, L., Olsen, Rikke Heidemann, Xiao, J., Meng, H., Peng, S. & Shi, L., 2022, In: Frontiers in Microbiology. 13, 899062.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Genome-wide analysis of fitness factors in uropathogenic Escherichia coli in a pig urinary tract infection model

    García, V., Stærk, K., Alobaidallah, M. S. A., Grønnemose, R. B., Guerra, Priscila Regina, Andersen, T. E., Olsen, John Elmerdahl & Herrero-Fresno, A., 2022, In: Microbiological Research. 265, p. 127202 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    Genomic Analysis of Escherichia coli Longitudinally Isolated from Broiler Breeder Flocks after the Application of an Autogenous Vaccine

    Lozica, L., Villumsen, Kasper Rømer, Li, G., Hu, X., Maurić Maljković, M. & Gottstein, Ž., 2022, In: Microorganisms. 10, 2, 377.

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    Genomic Characterization of mcr-1-Carrying Foodborne Salmonella enterica serovar Typhimurium and Identification of a Transferable Plasmid Carrying mcr-1, blaCTX-M-14, qnrS2, and oqxAB Genes From Ready-to-Eat Pork Product in China

    Li, L., Wan, X., Olsen, Rikke Heidemann, Xiao, J., Wang, C., Xu, X., Meng, H. & Shi, L., 2022, In: Frontiers in Microbiology. 13, 903268.

    Research output: Contribution to journal › Journal article › Research › peer-review

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