Jakob Hull Havgaard

Jakob Hull Havgaard

Associate Professor

ORCID: 0000-0002-4816-814X

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  1. Published

    Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure

    Torarinsson, E., Sawera, M., Havgaard, Jakob Hull, Fredholm, Merete & Gorodkin, Jan, 2006, In: Genome Research. 16, 7, p. 885-889 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Multiple structural alignment and clustering of RNA sequences: sequence analysis

    Torarinsson, E., Havgaard, Jakob Hull & Gorodkin, Jan, 2007, In: Bioinformatics. 23, 8, p. 926-32 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities

    Sundfeld, D., Teodoro, G., Havgaard, Jakob Hull, Gorodkin, Jan & Melo, A. C. M. A., 2020, In: Concurrency Computation. 32, 10, e5468.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment

    Sundfeld, D., Havgaard, Jakob Hull, Gorodkin, Jan & De Melo, A. C. M. A., 2017, Proceedings: 2017 25th Euromicro International Conference on Parallel, Distributed and Network-Based Processing, PDP 2017. IEEE, p. 295-302 8 p. 7912663

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  5. Published

    Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment

    Sundfeld, D., Havgaard, Jakob Hull, de Melo, A. C. M. A. & Gorodkin, Jan, 2016, In: Bioinformatics. 32, 8, p. 1238-1240 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation

    Panitz, F., Stengaard, H., Hornshøj, H., Gorodkin, J., Hedegaard, J., Cirera, S., Thomsen, B. S., Madsen, L. B., Høj, A., Vingborg, R., Zahn, B., Wang, X., Wang, X., Wernersson, R., Jørgensen, C. B., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M., Green, T. & 5 others, Nielsen, B., Havgaard, Jakob Hull, Brunak, Søren, Fredholm, Merete & Bendixen, C., 2007, In: Bioinformatics. 23, 13, p. i387-91 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    RNAscClust: Clustering RNA sequences using structure conservation and graph based motifs

    Miladi, M., Junge, A., Costa, F., Seemann, Ernst Stefan, Havgaard, Jakob Hull, Gorodkin, Jan & Backofen, R., 2017, In: Bioinformatics. 33, 14, p. 2089-2096 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots

    Kato, Y., Gorodkin, Jan & Havgaard, Jakob Hull, Dec 2017, In: BMC Genomics. 18, 1, 935.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Structural profiles of human miRNA families from pairwise clustering

    Kaczkowski, B., Þórarinsson, E., Reiche, K., Havgaard, Jakob Hull, Stadler, P. F. & Gorodkin, Jan, 2009, In: Bioinformatics. 25, 3, p. 291-294 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Assessing the miRNA sponge potential of RUNX1T1 in t(8;21) acute myeloid leukemia

    Junge, A., Zandi, R., Havgaard, Jakob Hull, Gorodkin, Jan & Cowland, J. B., 2017, In: Gene. 615, p. 35-40 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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