Jakob Hull Havgaard

Jakob Hull Havgaard

Associate Professor

ORCID: 0000-0002-4816-814X

Publication year:
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11 - 20 out of 26Page size: 10
  1. 2009
  2. Published

    Structural profiles of human miRNA families from pairwise clustering

    Kaczkowski, B., Þórarinsson, E., Reiche, K., Havgaard, Jakob Hull, Stadler, P. F. & Gorodkin, Jan, 2009, In: Bioinformatics. 25, 3, p. 291-294 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. 2010
  4. Published

    De novo prediction of structured RNAs from genomic sequences

    Gorodkin, Jan, Hofacker, I. L., Þórarinsson, E., Yao, Z., Havgaard, Jakob Hull & Ruzzo, W. L., 2010, In: Trends in Biotechnology. 28, 1, p. 9-19 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. 2012
  6. Published

    Comparative ncRNA gene and structure prediction using Foldalign and FoldalignM

    Havgaard, Jakob Hull, Kaur, S. & Gorodkin, Jan, 2012, In: Current Protocols in Bioinformatics. 39, p. 12.11.1-12.11.15 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. 2014
  8. Published

    RNA Structural Alignments, Part I: Sankoff-Based Approaches for Structural Alignments

    Havgaard, Jakob Hull & Gorodkin, Jan, 2014, RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods. Gorodkin, J. & Ruzzo, W. L. (eds.). p. 275-90 16 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  9. Published

    Structured RNAs and synteny regions in the pig genome

    Anthon, Christian, Tafer, H., Havgaard, Jakob Hull, Thomsen, B., Hedegaard, J., Seemann, Ernst Stefan, Pundhir, Sachin, Kehr, S., Bartschat, S., Nielsen, M., Nielsen, R. O., Fredholm, Merete, Stadler, P. F. & Gorodkin, Jan, 2014, In: BMC Genomics. 15, 27 p., 459.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. 2015
  11. Published

    Optimizing RNA structures by sequence extensions using RNAcop

    Hecker, N., Christensen-Dalsgaard, M., Seemann, Ernst Stefan, Havgaard, Jakob Hull, Stadler, P. F., Hofacker, I. L., Nielsen, Henrik & Gorodkin, Jan, 2015, In: Nucleic Acids Research. 43, 17, p. 8135-8145 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. 2016
  13. Published

    Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment

    Sundfeld, D., Havgaard, Jakob Hull, de Melo, A. C. M. A. & Gorodkin, Jan, 2016, In: Bioinformatics. 32, 8, p. 1238-1240 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Adipocyte gene expression and DNA methylation patterns differ significantly between lean and obese pigs

    Jacobsen, M. J., Havgaard, Jakob Hull, Mentzel, Caroline M. Junker, Sørensen, P. M., Pundhir, Sachin, Anthon, Christian, Karlskov-Mortensen, Peter, Bruun, Camilla Vibeke Sichlau, Cirera, Susanna, Gorodkin, Jan, Jørgensen, Claus Bøttcher, Barrès, Romain & Fredholm, Merete, 9 Nov 2016, In: Journal of Animal Science. 94, Supplement 4, p. 46-47 2 p., P2019.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  15. 2017
  16. Published

    Assessing the miRNA sponge potential of RUNX1T1 in t(8;21) acute myeloid leukemia

    Junge, A., Zandi, R., Havgaard, Jakob Hull, Gorodkin, Jan & Cowland, J. B., 2017, In: Gene. 615, p. 35-40 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment

    Sundfeld, D., Havgaard, Jakob Hull, Gorodkin, Jan & De Melo, A. C. M. A., 2017, Proceedings: 2017 25th Euromicro International Conference on Parallel, Distributed and Network-Based Processing, PDP 2017. IEEE, p. 295-302 8 p. 7912663

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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