Food Safety and Zoonoses

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  1. Published

    Evolutionary history of Staphylococcus aureus influences antibiotic resistance evolution

    Fait, A., Andersson, D. I. & Ingmer, Hanne, 2023, In: Current Biology. 33, 16, p. 3389-3397.e5

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Excess all-cause mortality during the COVID-19 pandemic in Europe – preliminary pooled estimates from the EuroMOMO network, March to April 2020

    Vestergaard, L. S., Nielsen, J., Richter, L., Schmid, D., Bustos, N., Braeye, T., Denissov, G., Veideman, T., Luomala, O., Möttönen, T., Fouillet, A., Caserio-Schönemann, C., der Heiden, M. A., Uphoff, H., Lytras, T., Gkolfinopoulou, K., Paldy, A., Domegan, L., O’Donnell, J., de’ Donato, F. & 24 others, Noccioli, F., Hoffmann, P., Velez, T., England, K., van Asten, L., White, R. A., Tønnessen, R., da Silva, S. P., Rodrigues, A. P., Larrauri, A., Delgado-Sanz, C., Farah, A., Galanis, I., Junker, C., Perisa, D., Sinnathamby, M., Andrews, N., O’Doherty, M., Marquess, D. F. P., Kennedy, S., Olsen, S. J., Pebody, R., Krause, T. G. & Mølbak, Kåre, 2020, In: Eurosurveillance. 25, 26, 6 p., 2001214.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Excess all-cause mortality in the USA and Europe during the COVID-19 pandemic, 2020 and 2021

    Rossen, L. M., Nørgaard, S. K., Sutton, P. D., Krause, Tyra Grove, Ahmad, F. B., Vestergaard, L. S., Mølbak, Kåre, Anderson, R. N. & Nielsen, J., 2022, In: Scientific Reports. 12, 18559.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Exit tunnel modulation as resistance mechanism of S. aureus erythromycin resistant mutant

    Halfon, Y., Matzov, D., Eyal, Z., Bashan, A., Zimmerman, E., Kjeldgaard, J., Ingmer, Hanne & Yonath, A., 2019, In: Scientific Reports. 9, 1, 8 p., 11460.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Experimental infection with the small intestinal trematode, Haplorchis pumilio, in young dogs

    Nissen, S., Nguyen, L. A. T., Dalsgaard, Anders, Thamsborg, Stig Milan & Johansen, M. V., 2013, In: Veterinary Parasitology. 191, 1-2, p. 138-142 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Experimental non-alcoholic steatohepatitis in Göttingen Minipigs: Consequences of high fat-fructose-cholesterol diet and diabetes

    Schumacher-Petersen, Camilla, Christoffersen, B. O., Kirk, R. K., Ludvigsen, T. P., Zois, N. E., Pedersen, H. D., Vyberg, M. & Olsen, Lisbeth Høier, 2019, In: Journal of Translational Medicine. 17, 1, 110.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Expert opinion on livestock antimicrobial usage indications and patterns in Denmark, Portugal and Switzerland

    Carmo, L. P., Bouzalas, I., Nielsen, Liza Rosenbaum, Alban, L. M., da Costa, P. M., Müntener, C., Schüpbach-Regula, G., Abreu, Y. & Magouras, I., Nov 2018, p. 1.

    Research output: Contribution to conference › Poster › Research › peer-review

  8. Published

    Exploiting phage receptor binding proteins to enable endolysins to kill Gram-negative bacteria

    Zampara, A., Sørensen, Martine Camilla Holst, Grimon, D., Antenucci, F., Vitt, Amira Ruslanovna, Bortolaia, V., Briers, Y. & Brøndsted, Lone, 2020, In: Scientific Reports. 10, 12 p., 12087.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Exploration of the Diversity of Clustered Regularly Interspaced Short Palindromic Repeats-Cas Systems in Clostridium novyi sensu lato

    Le Gratiet, T., Le Marechal, C., Devaere, M., Chemaly, M. & Woudstra, Cedric Folkert Julien, 2021, In: Frontiers in Microbiology. 12, 17 p., 711413.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Exposure, protection and self-reported health problems among solid waste handlers in a Coastal Peri-urban community in Ghana

    Kretchy, J., Dzodzomenyo, M., Vildekilde, Thilde, Ayi, I., Konradsen, Flemming, Fobil, J. N. & Dalsgaard, Anders, 2015, In: International Journal of Public Health and Epidemiology. 4, 2, p. 121-128 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    F4- and F18-Positive Enterotoxigenic Escherichia coli Isolates from Diarrhea of Postweaning Pigs: Genomic Characterization

    García, V., Gambino, Michela, Pedersen, K., Haugegaard, S., Olsen, John Elmerdahl & Herrero-Fresno, A., 2020, In: Applied and Environmental Microbiology. 86, 23

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Faecal contamination and health aspects of processing tomatoes (Solanum lycopersicum) irrigated with wastewater treated by decentralised wastewater treatment technologies

    Forslund, A., Battilani, A., Ensink, J. H. J., Markussen, Bo, Gola, S., Sandei, L., Solimando, D. & Dalsgaard, Anders, 2013, In: Acta Horticulturae. 971, p. 85-92 6 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  13. Published

    Farmer preference, utilization, and biochemical composition of improved cassava (Manihot esculenta Crantz) varieties in southeastern Africa

    Chiwona-Karltun, L., Nyirenda, D., Mwansa, C. N., Kongor, J. E., Brimer, L., Haggblade, S. & Afoakwa, E. O., 2015, In: Economic Botany. 69, 1, p. 42-56 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli

    Anjum, M., Madsen, Jonas Stenløkke, Nesme, Joseph, Jana, B., Wiese, M., Jasinskyte, D., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Dalsgaard, Anders, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, 2019, In: Antimicrobial Agents and Chemotherapy. 63, 5, 13 p., e02528-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Fatty Acid Profiles and Lipid Oxidation Status of Sun Dried, Deep Fried, and Smoked Sardine (Rastrineobola argentea) from Lake Victoria, Tanzania

    Chaula, D., Laswai, H., Chove, B., Dalsgaard, Anders, Mdegela, R. & Hyldig, G., 2019, In: Journal of Aquatic Food Product Technology. 28, 2, p. 165-176 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Fecal Shedding of Multidrug Resistant Escherichia coli Isolates in Dogs Fed with Raw Meat-Based Diets in Brazil

    Ramos, C. P., Kamei, C. Y. I., Viegas, F. M., de Melo Barbieri, J., Cunha, J. L. R., Hounmanou, Yaovi Mahuton Gildas, Coura, F. M., Santana, J. A., Lobato, F. C. F., Bojesen, Anders Miki & Silva, R. O. S., 2022, In: Antibiotics. 11, 4, 534.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Finding New Fundamental Pieces for the Bacterial Cell Division Puzzle

    Frees, Dorte & Ingmer, Hanne, 2022, In: mBio. 13, 4, e0073722.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Fishborne trematodes in cultured Nile tilapia (Oreochromis niloticus) and wild-caught fish from Thailand

    Wiriya, B., Clausen, J. H., Inpankaew, T., Thaenkham, U., Jittapalapong, S., Satapornvanit, K. & Dalsgaard, Anders, 2013, In: Veterinary Parasitology. 198, 1-2, p. 230-234 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Flagellotropic phages: common yet diverse host interaction strategies

    Gambino, Michela & Sørensen, Martine Camilla Holst, 2024, In: Current Opinion in Microbiology. 78, 7 p., 102451.

    Research output: Contribution to journal › Review › Research › peer-review

  20. Published

    Fluoroquinolone resistance does not facilitate phage Φ13 integration or excision in Staphylococcus aureus

    Leinweber, H., Sieber, R. N., Bojer, Martin Saxtorph, Larsen, J. & Ingmer, Hanne, 2023, In: Access microbiology. 5, 6, 19 p., 000583.v4.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Free-living birds from Caatinga and Atlantic Forest of northeast Brazil as hosts of Enterobacterales, Mycoplasma spp., and Chlamydia psittaci

    Lugarini, C., Silva, L. T. R., de Amorim, M. M. R., de Lima, D. C. V., Santos, S. B., Becker Simoes Saidenberg, André, Raso, T. F., Mota, R. A. & Silva, J. C. R., 2021, In: Ornithology Research. 29, p. 149–159

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    From Alpha Diversity to Zzz: Interactions among sleep, the brain, and gut microbiota in the first year of life

    Schoch, S. F., Castro-Mejía, J. L., Krych, Lukasz, Leng, B., Kot, Witold, Kohler, M., Huber, R., Rogler, G., Biedermann, L., Walser, J. C., Nielsen, Dennis Sandris & Kurth, S., 2022, In: Progress in Neurobiology. 209, 11 p., 102208.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Full-scale industrial phage trial targeting Salmonella on pork carcasses

    Volpi, M., Gambino, Michela, Kirkeby, K., Elsser-Gravesen, A. & Brøndsted, Lone, 2023, In: Food Microbiology. 112, 104240.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Functional Characterization of Type III-A CRISPR-Cas in a Clinical Human Methicillin-R Staphylococcus aureus Strain

    Yang, L., Mikkelsen, K., Grané, O. L. I., Wang, Z., Tang, Y., Jiao, X., Ingmer, Hanne, Høyland-Kroghsbo, Nina Molin & Li, Q., 2021, In: CRISPR Journal. 4, 5, p. 686-698

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Förster Resonance Energy Transfer Assay for Investigating the Reactivity of Thioesters in Biochemistry and Native Chemical Ligation

    Gless, B. H., Schmied, S. H., Bejder, Benjamin Svejdal & Olsen, Christian Adam, 2023, In: JACS Au. 3, 5, p. 1443–1451

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Fødevaresikkerhed i udvikling

    Ingmer, Hanne, Larsen, M. H., Leisner, Jørgen, Frees, Dorte, Brøndsted, Lone & Dalsgaard, Anders, 2019, In: Dansk Veterinaertidsskrift. 2019, 7, p. 10-13

    Research output: Contribution to journal › Journal article › Communication

  27. Published

    Fødevaresikkerhed, egenkontrol og kultur: et studie af egenkontrollen og fødevaresikkerhedskulturen på tre mindre kødforarbejdende virksomheder

    Nøhr, R., Larsen, M. H., Nørrung, Birgit & Lassen, J., 2016, Institut for Fødevare- og Ressourceøkonomi, Københavns Universitet. 42 p. (IFRO Rapport; No. 246).

    Research output: Book/Report › Report › Research

  28. Published

    Genes associated to lactose metabolism illustrate the high diversity of Carnobacterium maltaromaticum

    Iskandar, C. F., Cailliez-Grimal, C., Rahman, A., Rondags, E., Remenant, B., Zagorec, M., Leisner, Jørgen, Borges, F. & Revol-Junelles, A., Sep 2016, In: Food Microbiology. 58, p. 79-86

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Genetic Comparison of ESBL-Producing Escherichia coli from Workers and Pigs at Vietnamese Pig Farms

    Truong, D. T. Q., Hounmanou, Yaovi Mahuton Gildas, Dang, S. T. T., Olsen, John Elmerdahl, Truong, G. T. H., Tran, N. T., Scheutz, F. & Dalsgaard, Anders, 2021, In: Antibiotics. 10, 10, 1165.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Genetic relationship among avian isolates classified as Pasteurella haemolytica. 'Actinobacillus salpingitidis' or Pasteurella anatis with proposal of Gallibacterium anatis gen. nov., comb. nov. and description of additional genomospecies with Gallibacterium gen. nov

    Christensen, Henrik, Bisgaard, M., Bojesen, Anders Miki, Mutters, R. & Olsen, John Elmerdahl, Jan 2003, In: International Journal of Systematic and Evolutionary Microbiology. 53, 1, p. 275-287 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Genetic variation in the Staphylococcus aureus 8325 strain lineage revealed by whole-genome sequencing

    Bæk, K. T., Frees, Dorte, Renzoni, A., Barras, C., Rodriguez, N., Manzano, C. & Kelley, W. L., 2013, In: P L o S One. 8, 9, 16 p., e77122.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Genetic variations in pattern recognition receptor loci are associated with anti-TNF response in patients with rheumatoid arthritis

    Sode, J., Vogel, U., Bank, S., Andersen, P. S., Hetland, Merete Lund, Locht, H., Heegaard, N. H. H. & Andersen, V., 6 Oct 2015, In: P L o S One. 10, 10, 13 p., e0139781.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Genetically determined high activities of the TNF-alpha, IL23/IL17, and NFkB pathways were associated with increased risk of ankylosing spondylitis

    Sode, J., Bank, S., Vogel, U., Andersen, P. S., Sørensen, S. B., Bojesen, A. B., Andersen, M. R., Brandslund, I., Dessau, R. B., Hoffmann, H. J., Glintborg, B., Hetland, Merete Lund, Locht, H., Heegaard, N. H. & Andersen, V., 2018, In: BMC Medical Genetics. 19, 16 p., 165.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Genetically determined high activity of IL-12 and IL-18 in ulcerative colitis and TLR5 in Crohns disease were associated with non-response to anti-TNF therapy

    Bank, S., Andersen, P. S., Burisch, J., Pedersen, N., Roug, S., Galsgaard, J., Turino, S. Y., Brodersen, J. B., Rashid, S., Rasmussen, B. K., Avlund, S., Olesen, T. B., Hoffmann, H. J., Nexø, B. A., Sode, J., Vogel, U. & Andersen, V., Jan 2018, In: Pharmacogenomics Journal. 18, 1, p. 87-97 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Genome Sequences of 16 Escherichia coli Bacteriophages Isolated from Wastewater, Pond Water, Cow Manure, and Bird Feces

    Vitt, Amira Ruslanovna, Ahern, S. J., Gambino, Michela, Sørensen, Martine Camilla Holst & Brøndsted, Lone, 2022, In: Microbiology resource announcements. 11, 10

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Genome analysis of Clostridium perfringens isolates from healthy and necrotic enteritis infected chickens and turkeys

    Ronco, T., Stegger, M., Ng, K. L., Lilje, B., Lyhs, U., Andersen, P. S. & Pedersen, K., Jul 2017, In: BMC Research Notes. 10, 1, 6 p., 270.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Genome-Based Analysis of Extended-Spectrum β-Lactamase-Producing Escherichia coli in the Aquatic Environment and Nile Perch (Lates niloticus) of Lake Victoria, Tanzania

    Baniga, Z., Hounmanou, Yaovi Mahuton Gildas, Kudirkiene, E., Kusiluka, L. J. M., Mdegela, R. H. & Dalsgaard, Anders, 2020, In: Frontiers in Microbiology. 11, p. 108 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Genome-Wide Identification of Antimicrobial Intrinsic Resistance Determinants in Staphylococcus aureus

    Vestergaard, M., Leng, B., Haaber, J., Bojer, Martin Saxtorph, Vegge, C. S. & Ingmer, Hanne, 19 Dec 2016, In: Frontiers in Microbiology. 7, 10 p., 2018.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Genome-wide identification of resveratrol intrinsic resistance determinants in staphylococcus aureus

    Liu, L., Ingmer, Hanne & Vestergaard, M., 2021, In: Antibiotics. 10, 1, p. 1-9 9 p., 82.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Genomic Microevolution of Vibrio cholerae O1, Lake Tanganyika Basin, Africa

    Hounmanou, Yaovi Mahuton Gildas, Njamkepo, E., Rauzier, J., Gallandat, K., Jeandron, A., Kamwiziku, G., Porten, K., Luquero, F., Abedi, A. A., Rumedeka, B. B., Miwanda, B., Michael, M., Okitayemba, P. W., Saidi, J. M., Piarroux, R., Weill, F. X., Dalsgaard, Anders & Quilici, M. L., 2023, In: Emerging Infectious Diseases . 29, 1, p. 149-153 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Genomic analyses of Staphylococcus aureus clonal complex 45 isolates does not distinguish nasal carriage from bacteraemia

    Roe, C., Stegger, M., Lilje, B., Johannesen, T. B., Ng, K. L., Sieber, R. N., Driebe, E., Engelthaler, D. M. & Andersen, P. S., 2020, In: Microbial Genomics. 6, 8, 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Genomic analysis of antimicrobial resistance and resistance plasmids in salmonella serovars from poultry in Nigeria

    Jibril, A. H., Okeke, I. N., Dalsgaard, Anders, Menéndez, V. G. & Olsen, John Elmerdahl, 2021, In: Antibiotics. 10, 2, p. 1-22 22 p., 99.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

    Munk, P., Brinch, C., Møller, F. D., Petersen, T. N., Hendriksen, R. S., Seyfarth, A. M., Kjeldgaard, J. S., Svendsen, C. A., van Bunnik, B., Berglund, F., Bego, A., Power, P., Rees, C., Lambrinidis, D., Neilson, E. H. J., Gibb, K., Coventry, K., Collignon, P., Cassar, S., Allerberger, F. & 31 others, Begum, A., Hossain, Z. Z., Worrell, C., Vandenberg, O., Pieters, I., Victorien, D. T., Gutierrez, A. D. S., Soria, F., Grujić, V. R., Mazalica, N., Rahube, T. O., Tagliati, C. A., Rodrigues, D., Oliveira, G., de Souza, L. C. R., Ivanov, I., Juste, B. I., Oumar, T., Sopheak, T., Vuthy, Y., Ngandijo, A., Nzouankeu, A., Olivier, Z. A. A. J., Yost, C. K., Hansen, L. T., Jensen, P. E., Parimannan, S., Hounmanou, Yaovi Mahuton Gildas, Thomsen, J., Aarestrup, F. M. & Global Sewage Surveillance Consortium, G. S. S. C., 2022, In: Nature Communications. 13, 16 p., 7251.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Genomic analysis of the zoonotic ST73 lineage containing avian and human extraintestinal pathogenic Escherichia coli (ExPEC)

    Becker Simoes Saidenberg, André, van Vliet, A. H. M., Stegger, M., Johannesen, T. B., Semmler, T., Cunha, M., C. de O. Silveira, A., Kuroki Anzai, E., C.A. Scaletsky, I., Dalsgaard, Anders, La Ragione, R. M. & Knöbl, T., 2022, In: Veterinary Microbiology. 267, 109372.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Genomic analysis reveals different mechanisms of fusidic acid resistance in Staphylococcus aureus from Danish atopic dermatitis patients

    Edslev, S. M., Clausen, M. L., Agner, Tove, Stegger, M. & Andersen, P. S., 2018, In: Journal of Antimicrobial Chemotherapy. 73, 4, p. 856-861 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Genomic and Phenotypic Insights for Toxigenic Clinical Vibrio cholerae O141

    Hounmanou, Yaovi Mahuton Gildas, Sit, B., Fakoya, B., Waldor, M. K. & Dalsgaard, Anders, 2022, In: Emerging Infectious Diseases . 28, 3, p. 617-624 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Genomic characterization, phylogenetic analysis, and identification of virulence factors in Aerococcus sanguinicola and Aerococcus urinae strains isolated from infection episodes

    Carkaci, D., Højholt, K., Nielsen, X. C., Dargis, R., Rasmussen, Simon, Skovgaard, O., Fuursted, K., Andersen, P. S., Stegger, M. & Christensen, J. J., Nov 2017, In: Microbial Pathogenesis. 112, p. 327-340 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Genomic insights into Vibrio cholerae O1 responsible for cholera epidemics in Tanzania between 1993 and 2017

    Hounmanou, Yaovi Mahuton Gildas, Leekitcharoenphon, P., Kudirkiene, E., Mdegela, R. H., Hendriksen, R. S., Olsen, John Elmerdahl & Dalsgaard, Anders, 2019, In: PLOS Neglected Tropical Diseases . 13, 12, 14 p., e0007934.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Genomic traits of Aeromonas veronii isolated from slaughtered Danish broilers

    Erickson, Vera Irene, Alfifi, Ahmed Eassa H, Hounmanou, Yaovi Mahuton Gildas, Sana, M. J., Christensen, Jens Peter & Dalsgaard, Anders, 2023, In: Veterinary Microbiology. 283, 109772.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Global responses to oxytetracycline treatment in tetracycline-resistant Escherichia coli

    Møller, T. S. B., Liu, G., Hartman, H. B., Rau, M. H., Mortensen, S., Thamsborg, K., Johansen, A. E., Sommer, M. O. A., Guardabassi, Luca, Poolman, M. G. & Olsen, John Elmerdahl, 2020, In: Scientific Reports. 10, 1, 13 p., 8438.

    Research output: Contribution to journal › Journal article › Research › peer-review

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