Sequence assembly

Publikation: Bidrag til tidsskrift › Review › Forskning › fagfællebedømt

Standard

Sequence assembly. / Scheibye-Alsing, Karsten; Hoffmann, S.; Frankel, Annett Maria; Jensen, Peter; Stadler, P.F.; Mang, Yuan; Tommerup, Niels; Gilchrist, M.J.; Hillig, Ann-Britt Nygaard; Cirera Salicio, Susanna; Jørgensen, Claus Bøttcher; Fredholm, Merete; Gorodkin, Jan.

I: Computational Biology and Chemistry, Bind 33, Nr. 2, 2009, s. 121-136.

Publikation: Bidrag til tidsskrift › Review › Forskning › fagfællebedømt

Harvard

Scheibye-Alsing, K, Hoffmann, S, Frankel, AM, Jensen, P, Stadler, PF, Mang, Y, Tommerup, N, Gilchrist, MJ, Hillig, A-BN, Cirera Salicio, S, Jørgensen, CB, Fredholm, M & Gorodkin, J 2009, 'Sequence assembly', Computational Biology and Chemistry, bind 33, nr. 2, s. 121-136. https://doi.org/10.1016/j.compbiolchem.2008.11.003

APA

Scheibye-Alsing, K., Hoffmann, S., Frankel, A. M., Jensen, P., Stadler, P. F., Mang, Y., Tommerup, N., Gilchrist, M. J., Hillig, A-B. N., Cirera Salicio, S., Jørgensen, C. B., Fredholm, M., & Gorodkin, J. (2009). Sequence assembly. Computational Biology and Chemistry, 33(2), 121-136. https://doi.org/10.1016/j.compbiolchem.2008.11.003

Vancouver

Scheibye-Alsing K, Hoffmann S, Frankel AM, Jensen P, Stadler PF, Mang Y o.a. Sequence assembly. Computational Biology and Chemistry. 2009;33(2):121-136. https://doi.org/10.1016/j.compbiolchem.2008.11.003

Author

Scheibye-Alsing, Karsten ; Hoffmann, S. ; Frankel, Annett Maria ; Jensen, Peter ; Stadler, P.F. ; Mang, Yuan ; Tommerup, Niels ; Gilchrist, M.J. ; Hillig, Ann-Britt Nygaard ; Cirera Salicio, Susanna ; Jørgensen, Claus Bøttcher ; Fredholm, Merete ; Gorodkin, Jan. / Sequence assembly. I: Computational Biology and Chemistry. 2009 ; Bind 33, Nr. 2. s. 121-136.

Bibtex

@article{380abc9003e711deb05e000ea68e967b,
title = "Sequence assembly",
abstract = "Despite the rapidly increasing number of sequenced and re-sequenced genomes, many issues regarding the computational assembly of large-scale sequencing data have remain unresolved. Computational assembly is crucial in large genome projects as well for the evolving high-throughput technologies and plays an important role in processing the information generated by these methods. Here, we provide a comprehensive overview of the current publicly available sequence assembly programs. We describe the basic principles of computational assembly along with the main concerns, such as repetitive sequences in genomic DNA, highly expressed genes and alternative transcripts in EST sequences. We summarize existing comparisons of different assemblers and provide a detailed descriptions and directions for download of assembly programs at: http://genome.ku.dk/resources/assembly/methods.html.",
author = "Karsten Scheibye-Alsing and S. Hoffmann and Frankel, {Annett Maria} and Peter Jensen and P.F. Stadler and Yuan Mang and Niels Tommerup and M.J. Gilchrist and Hillig, {Ann-Britt Nygaard} and {Cirera Salicio}, Susanna and J{\o}rgensen, {Claus B{\o}ttcher} and Merete Fredholm and Jan Gorodkin",
year = "2009",
doi = "10.1016/j.compbiolchem.2008.11.003",
language = "English",
volume = "33",
pages = "121--136",
journal = "Computational Biology and Chemistry",
issn = "1476-9271",
publisher = "Elsevier",
number = "2",

}

RIS

TY - JOUR

T1 - Sequence assembly

AU - Scheibye-Alsing, Karsten

AU - Hoffmann, S.

AU - Frankel, Annett Maria

AU - Jensen, Peter

AU - Stadler, P.F.

AU - Mang, Yuan

AU - Tommerup, Niels

AU - Gilchrist, M.J.

AU - Hillig, Ann-Britt Nygaard

AU - Cirera Salicio, Susanna

AU - Jørgensen, Claus Bøttcher

AU - Fredholm, Merete

AU - Gorodkin, Jan

PY - 2009

Y1 - 2009

N2 - Despite the rapidly increasing number of sequenced and re-sequenced genomes, many issues regarding the computational assembly of large-scale sequencing data have remain unresolved. Computational assembly is crucial in large genome projects as well for the evolving high-throughput technologies and plays an important role in processing the information generated by these methods. Here, we provide a comprehensive overview of the current publicly available sequence assembly programs. We describe the basic principles of computational assembly along with the main concerns, such as repetitive sequences in genomic DNA, highly expressed genes and alternative transcripts in EST sequences. We summarize existing comparisons of different assemblers and provide a detailed descriptions and directions for download of assembly programs at: http://genome.ku.dk/resources/assembly/methods.html.

AB - Despite the rapidly increasing number of sequenced and re-sequenced genomes, many issues regarding the computational assembly of large-scale sequencing data have remain unresolved. Computational assembly is crucial in large genome projects as well for the evolving high-throughput technologies and plays an important role in processing the information generated by these methods. Here, we provide a comprehensive overview of the current publicly available sequence assembly programs. We describe the basic principles of computational assembly along with the main concerns, such as repetitive sequences in genomic DNA, highly expressed genes and alternative transcripts in EST sequences. We summarize existing comparisons of different assemblers and provide a detailed descriptions and directions for download of assembly programs at: http://genome.ku.dk/resources/assembly/methods.html.

U2 - 10.1016/j.compbiolchem.2008.11.003

DO - 10.1016/j.compbiolchem.2008.11.003

M3 - Review

C2 - 19152793

VL - 33

SP - 121

EP - 136

JO - Computational Biology and Chemistry

JF - Computational Biology and Chemistry

SN - 1476-9271

IS - 2

ER -

ID: 10795237