Food Safety and Zoonoses

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  1. Published

    Presence and analysis of plasmids in human and animal associated Arcobacter species

    Douidah, L., De Zutter, L., Van Nieuwerburgh, F., Deforce, D., Ingmer, Hanne, Vandenberg, O., Van den Abeele, A. & Houf, K., 2014, In: PloS one. 9, 1, 8 p., e85487.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Skin microbiome in atopic dermatitis

    Edslev, S. M., Agner, Tove & Andersen, P. S., 2020, In: Acta Dermato-Venereologica. 100, 100-year theme Atopic dermatitis, p. 358-366 9 p., adv00164.

    Research output: Contribution to journal › Review › Research › peer-review

  3. Published

    Genomic analysis reveals different mechanisms of fusidic acid resistance in Staphylococcus aureus from Danish atopic dermatitis patients

    Edslev, S. M., Clausen, M. L., Agner, Tove, Stegger, M. & Andersen, P. S., 2018, In: Journal of Antimicrobial Chemotherapy. 73, 4, p. 856-861 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Staphylococcal communities on skin are associated with atopic dermatitis and disease severity.

    Edslev, S. M., Olesen, C. M., Nørreslet, L. B., Ingham, A. C., Iversen, S., Lilje, B., Clausen, M. L., Jensen, J. S., Stegger, M., Agner, Tove & Andersen, P. S., 2021, In: Microorganisms. 9, 2, p. 1-17 17 p., 432.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Identification of cutaneous fungi and mites in adult atopic dermatitis: analysis by targeted 18S rRNA amplicon sequencing

    Edslev, S. M., Andersen, P. S., Agner, Tove, Saunte, Ditte Marie, Ingham, A. C., Johannesen, T. B. & Clausen, M. L., 2021, In: BMC Microbiology. 21, 1, 8 p., 72.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Soluble C-Type Lectin-Receptor Ligands Stimulate ROS Production in Dendritic Cells and Potentiate Killing of MRSA as Well as the MRSA Induced IL-12 Production

    Eld, H. M. S., Johnsen, Peter Riber, Nielsen, E. M., Jørgensen, F. Z., Lindstrøm-Svendsen, M., Baldry, M., Ingmer, Hanne & Frøkiær, Hanne, 2022, In: Frontiers in Immunology. 13, 845881.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Cefoxitin treatment of MRSA leads to a shift in the IL-12/IL-23 production pattern in dendritic cells by a mechanism involving changes in the MAPK signaling

    Eld, H. M. S., Nielsen, E. M., Johnsen, Peter Riber, Marengo, M., Kamper, I. W., Frederiksen, L., Bonomi, F., Frees, Dorte, Iametti, S. & Frøkiær, Hanne, 2021, In: Molecular Immunology. 134, p. 1-12 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Antimicrobial resistant E. coli and enterococci in pangasius fillets and prawns in Danish retail imported from Asia.

    Ellis-Iversen, J., Seyfarth, A. M., Korsgaard, H., Bortolaia, V., Munck, N. & Dalsgaard, Anders, 2020, In: Food Control. 114, 106958.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Comparative genomic analysis of Aeromonas dhakensis and Aeromonas hydrophila from diseased striped catfish fingerlings cultured in Vietnam

    Erickson, Vera Irene, Khoi, L. M., Hounmanou, Yaovi Mahuton Gildas, Dung, T. T., Phu, T. M. & Dalsgaard, Anders, 2023, In: Frontiers in Microbiology. 14, 14 p., 1254781.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Genomic traits of Aeromonas veronii isolated from slaughtered Danish broilers

    Erickson, Vera Irene, Alfifi, Ahmed Eassa H, Hounmanou, Yaovi Mahuton Gildas, Sana, M. J., Christensen, Jens Peter & Dalsgaard, Anders, 2023, In: Veterinary Microbiology. 283, 109772.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Cohort description: The Danish blood donor staphylococcus aureus carriage study

    Erikstrup, L. T., Dinh, K. M., Andersen, P. S., Skov, R. L., Kaspersen, K. A., Nielsen, K. R., Ellermann-Eriksen, S. & Erikstrup, C., 2019, In: Clinical Epidemiology. 11, p. 885-900 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Association between SARS-CoV-2 infection and self-harm: Danish nationwide register-based cohort study

    Erlangsen, A., Qin, P., Madsen, Trine, Hawton, K., Osler, Merete, Hjorthøj, Carsten, Benros, Michael Eriksen, Ethelberg, Steen, Mølbak, Kåre, Laursen, T. M., Nordentoft, Merete & Nilsson, S. F., 2023, In: The British journal of psychiatry : the journal of mental science. 222, 4, p. 167–174 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories

    Fait, A., Seif, Y., Mikkelsen, K., Poudel, S., Wells, J. M., Palsson, B. O. & Ingmer, Hanne, 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 30, e2118262119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Evolutionary history of Staphylococcus aureus influences antibiotic resistance evolution

    Fait, A., Andersson, D. I. & Ingmer, Hanne, 2023, In: Current Biology. 33, 16, p. 3389-3397.e5

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Proteomic analyses of iron-responsive, Clp-dependent changes in Staphylococcus aureus

    Farrand, A. J., Friedman, D. B., Reniere, M. L., Ingmer, Hanne, Frees, Dorte & Skaar, E. P., Apr 2015, In: Pathogens and Disease. 73, 3, 6 p., ftv004.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Regulation of host hemoglobin binding by the Staphylococcus aureus Clp proteolytic system

    Farrand, A. J., Reniere, M. L., Ingmer, Hanne, Frees, Dorte & Skaar, E. P., 2013, In: Journal of Bacteriology. 195, 22, p. 5041-5050 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Trapping and proteomic identification of cellular substrates of the ClpP protease in Staphylococcus aureus

    Feng, J., Michalik, S., Varming, A. N., Andersen, J. H., Albrecht, D., Jelsbak, L., Krieger, S., Ohlsen, K., Hecker, M., Gerth, U., Ingmer, Hanne & Frees, Dorte, 2013, In: Journal of Proteome Research. 12, 2, p. 547-558 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Diet-Dependent Changes of the DNA Methylome Using a Göttingen Minipig Model for Obesity

    Feng, Y., Cirera, Susanna, Taşöz, E., Liu, Y., Olsen, Lisbeth Høier, Christoffersen, B. Ø., Pedersen, H. D., Ludvigsen, T. P., Kirk, R. K., Schumacher-Petersen, Camilla, Deng, Y., Fredholm, Merete & Gao, Fei, 2021, In: Frontiers in Genetics. 12, 632859.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Bacteriophages benefit from generalized transduction

    Fillol-Salom, A., Alsaadi, Ahlam Musaibeh M, Sousa, J. A. M. D., Zhong, L., Foster, K. R., Rocha, E. P. C., Penadés, J. R., Ingmer, Hanne & Haaber, J., 2019, In: PLOS Pathogens. 15, 7, 22 p., e1007888.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    PasT of Escherichia coli sustains antibiotic tolerance and aerobic respiration as a bacterial homolog of mitochondrial Coq10

    Fino, C., Vestergaard, M., Ingmer, Hanne, Pierrel, F., Gerdes, K. & Harms, A., 2020, In: MicrobiologyOpen. 9, 8, 36 p., e1064.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    A Cross-Sectional Study of SARS-CoV-2 Antibodies and Risk Factors for Seropositivity in Staff in Day Care Facilities and Preschools in Denmark

    Fogh, K., Eriksen, A. R. R., Larsen, T. G., Hasselbalch, R. B., Bundgaard, H., Scharff, B., Nielsen, S. D., Jørgensen, C. S., Erikstrup, C., Østergaard, L., Ellermann-Eriksen, S., Andersen, B., Nielsen, H., Johansen, I. S., Wiese, L., Hindhede, L., Mikkelsen, S., Sækmose, S. G., Aagaard, B., Holm, D. K. & 16 others, Harritshøj, Lene Holm, Simonsen, L., Fischer, Thea Kølsen, Folke, Fredrik, Lippert, F., Ostrowski, Sisse Rye, Benfield, Thomas, Mølbak, Kåre, Ethelberg, Steen, Koch, A., Vangsted, A., Krause, Tyra Grove, Fomsgaard, A., Ullum, H., Skov, R. & Iversen, Kasper, 2023, In: Microbiology Spectrum. 11, 1, 11 p., e0417422.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Molecular epidemiology of the SARS-CoV-2 variant Omicron BA.2 sub-lineage in Denmark, 29 November 2021 to 2 January 2022

    Fonager, J., Bennedbæk, M., Bager, P., Wohlfahrt, J., Ellegaard, K. M., Ingham, A. C., Edslev, S. M., Stegger, M., Sieber, R. N., Lassauniere, R., Fomsgaard, A., Lillebaek, T., Svarrer, C. W., Møller, F. T., Møller, C. H., Legarth, R., Sydenham, T. V., Steinke, K., Paulsen, S. J., Castruita, J. A. S. & 15 others, Schneider, Uffe Vest, Schouw, C. H., Nielsen, X. C., Overvad, M., Nielsen, R. T., Marvig, R. L., Pedersen, M. S., Nielsen, L., Nilsson, L. L., Bybjerg-Grauholm, J., Tarpgaard, I. H., Ebsen, T. S., Lam, J. U. H., Gunalan, V. & Rasmussen, M., 2022, In: Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin. 27, 10, 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    A universal primer-independent next-generation sequencing approach for investigations of norovirus outbreaks and novel variants

    Fonager, J., Stegger, M., Rasmussen, L. D., Poulsen, M. W., Ronn, J., Andersen, P. S. & Fischer, Thea Kølsen, 2017, In: Scientific Reports. 7, 11 p., 813.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Faecal contamination and health aspects of processing tomatoes (Solanum lycopersicum) irrigated with wastewater treated by decentralised wastewater treatment technologies

    Forslund, A., Battilani, A., Ensink, J. H. J., Markussen, Bo, Gola, S., Sandei, L., Solimando, D. & Dalsgaard, Anders, 2013, In: Acta Horticulturae. 971, p. 85-92 6 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  25. Published

    Does Virulence Assessment of Vibrio anguillarum Using Sea Bass (Dicentrarchus labrax) Larvae Correspond with Genotypic and Phenotypic Characterization?

    Frans, I., Dierckens, K., Crauwels, S., Van Assche, A., Leisner, Jørgen, Larsen, M. H., Michiels, C. W., Willems, K. A., Lievens, B., Bossier, P. & Rediers, H., 2013, In: P L o S One. 8, 8, p. 1-9 9 p., e70477.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Bacterial chitinases and chitin-binding proteins as virulence factors

    Frederiksen, R. F., Paspaliari, D. K., Larsen, T., Storgaard, B. G., Larsen, M. H., Ingmer, Hanne, Palcic, M. & Leisner, Jørgen, 2013, In: Microbiology. 159, 5, p. 833-847 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Effects of Listeria monocytogenes EGD-e and Salmonella enterica ser. Typhimurium LT2 chitinases on intracellular survival in Dictyostelium discoideum and mammalian cell lines

    Frederiksen, R. F. & Leisner, Jørgen, May 2015, In: F E M S Microbiology Letters. 362, 10, 7 p., fnv067.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    A diverse range of bacterial and eukaryotic chitinases hydrolyzes the LacNAc (Galβ1-4GlcNAc) and LacdiNAc (GalNAcβ1-4GlcNAc) motifs found on vertebrate and insect cells

    Frederiksen, R. F., Yoshimura, Y., Storgaard, B. G., Paspaliari, D. K., Petersen, B. O., Chen, K., Larsen, T., Duus, J. Ø., Ingmer, Hanne, Bovin, N. V., Westerlind, U., Blixt, K. O., Palcic, M. M. & Leisner, Jørgen, 2015, In: The Journal of Biological Chemistry. 290, 9, p. 5354-5366 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Stress Responses in Staphylococcus aureus

    Frees, Dorte & Ingmer, Hanne, Oct 2016, Staphylococcus: Genetics and Physiology. Somerville, G. A. (ed.). Caister Academic Press, p. 221-248

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  30. Published

    Clp chaperones and proteases are central in stress survival, virulence and antibiotic resistance of Staphylococcus aureus

    Frees, Dorte, Gerth, U. & Ingmer, Hanne, 2014, In: International Journal of Medical Microbiology. 304, 2, p. 142-149 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Finding New Fundamental Pieces for the Bacterial Cell Division Puzzle

    Frees, Dorte & Ingmer, Hanne, 2022, In: mBio. 13, 4, e0073722.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Bacterial proteases and virulence

    Frees, Dorte, Brøndsted, Lone & Ingmer, Hanne, 2013, Regulated proteolysis in microorganisms. Dougan, D. A. (ed.). Springer, p. 161-192 32 p. (Subcellular biochemistry, Vol. 66).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  33. Published

    Human antimicrobial peptide, LL-37, induces non-inheritable reduced susceptibility to vancomycin in Staphylococcus aureus

    Friberg, C., Haaber, J. K., Vestergaard, M., Fait, A., Perrot, V., Levin, B. R. & Ingmer, Hanne, 2020, In: Scientific Reports. 10, 1, 8 p., 13121.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Impact of the Gram-Negative-Selective Inhibitor MAC13243 on In Vitro Simulated Gut Microbiota

    Svanberg Frisinger, Frida, Pirolo, Mattia, Ng, D. Y. K., Mao, Xiaotian, Nielsen, Dennis Sandris & Guardabassi, Luca, 2022, In: Pharmaceuticals. 15, 6, 731.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Determinants of sporadic Campylobacter infections in Denmark: a nationwide case-control study among children and young adults

    Gaardbo Kuhn, K., Nielsen, E. M., Mølbak, Kåre & Ethelberg, Steen, 2018, In: Clinical Epidemiology. 10, p. 1695-1707

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    A simple and reliable methodology to detect egg white in art samples

    Gambino, Michela, Cappitelli, F., Cattò, C., Carpen, A., Principi, P., Ghezzi, L., Bonaduce, I., Galano, E., Pucci, P., Birolo, L., Villa, F. & Forlani, F., 2013, In: Journal of Biosciences.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    The tombstones at the Monumental Cemetery of Milano select for a specialized microbial community

    Gambino, Michela, Lepri, G., Štovícek, A., Ghazayarn, L., Villa, F., Gillor, O. & Cappitelli, F., 2021, In: International Biodeterioration and Biodegradation. 164, 105298.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Phage s144, a new polyvalent phage infecting salmonella spp. And cronobacter sakazakii

    Gambino, Michela, Sørensen, Anders Nørgaard, Ahern, S., Smyrlis, G., Gencay, Y. E., Hendrix, H., Neve, H., Noben, J. P., Lavigne, R. & Brøndsted, Lone, 2020, In: International Journal of Molecular Sciences . 21, 15, 42 p., 5196.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Flagellotropic phages: common yet diverse host interaction strategies

    Gambino, Michela & Sørensen, Martine Camilla Holst, 2024, In: Current Opinion in Microbiology. 78, 7 p., 102451.

    Research output: Contribution to journal › Review › Research › peer-review

  40. Published

    Looking into the future of phage-based control of zoonotic pathogens in food and animal production

    Gambino, Michela & Brøndsted, Lone, 2021, In: Current Opinion in Biotechnology. 68, p. 96-103 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  41. Published

    SWOT analysis of risk factors associated with introduction of African Swine Fever through vehicles returning after export of pigs

    Gao, Y., Nielsen, L. H., Boklund, Anette, de Jong, M. C. M. & Alban, L., 2023, In: Frontiers in Veterinary Science. 9, 1049940.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Estimating the impact of low temperature on African swine fever virus transmission through contaminated environments

    Gao, Y., Boklund, Anette, Nielsen, L. H., Alban, L. & de Jong, M. C. M., 2023, In: Preventive Veterinary Medicine. 219, 105991.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    ECOPHAGE: Combating Antimicrobial Resistance Using Bacteriophages for Eco-Sustainable Agriculture and Food Systems

    García, P., Tabla, R., Anany, H., Bastias, R., Brøndsted, Lone, Casado, S., Cifuentes, P., Deaton, J., Denes, T. G., Islam, M. A., Lavigne, R., Moreno-Switt, A. I., Nakayama, N., Muñoz Madero, C., Sulakvelidze, A., Svircev, A. M., Wagemans, J., Biosca, E. G. & Rivera, D., 2023, In: Viruses. 15, 11, 18 p., 2224.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    F4- and F18-Positive Enterotoxigenic Escherichia coli Isolates from Diarrhea of Postweaning Pigs: Genomic Characterization

    García, V., Gambino, Michela, Pedersen, K., Haugegaard, S., Olsen, John Elmerdahl & Herrero-Fresno, A., 2020, In: Applied and Environmental Microbiology. 86, 23

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Methods for isolation, purification, and propagation of bacteriophages of Campylobacter jejuni

    Gencay, Y. E., Birk, T., Sørensen, Martine Camilla Holst & Brøndsted, Lone, 2017, Campylobacter jejuni: Methods and Protocols. Humana Press, Vol. 1512. p. 19-28 10 p. (Methods in Molecular Biology, Vol. 1512).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  46. Published

    Bacteriophages for biological control of foodborne pathogens

    Gencay, Y. E. & Brøndsted, Lone, 2019, Food Microbiology: Fundamentals and Frontiers. 5 ed. Wiley, p. 755-786 32 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  47. Published

    The genera of bacteriophages and their receptors are the major determinants of host range

    Gencay, Y. E., Gambino, Michela, Prüssing, T. F. & Brøndsted, Lone, 2019, In: Environmental Microbiology. 21, 6, p. 2095-2111

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Whole-genome sequence of the bacteriophage-sensitive strain Campylobacter jejuni NCTC12662

    Gencay, Y. E., Sørensen, Martine Camilla Holst & Brøndsted, Lone, 2017, In: Genome Announcements. 5, 21, e00409-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Phase variable expression of a single phage receptor in Campylobacter jejuni NCTC12662 influences sensitivity toward several diverse CPS-dependent phages

    Gencay, Y. E., Sørensen, Martine Camilla Holst, Wenzel, C. Q., Szymanski, C. M. & Brøndsted, Lone, Feb 2018, In: Frontiers in Microbiology. 9, 2, 13 p., 82.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Koyun orijinli Toxoplasma gondii izolatlarının multilokus PCR-RFLP yöntemi ile genotiplendirilmesi

    Gençay, Y. E., Gökpinar, S., Babür, C. & Yildiz, K., 2019, In: Ankara Universitesi Veteriner Fakultesi Dergisi. 66, 3, p. 273-280 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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