Food Safety and Zoonoses

  1. 2021
  2. Published

    Genome-wide identification of resveratrol intrinsic resistance determinants in staphylococcus aureus

    Liu, L., Ingmer, Hanne & Vestergaard, M., 2021, In: Antibiotics. 10, 1, p. 1-9 9 p., 82.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Genomic analysis of antimicrobial resistance and resistance plasmids in salmonella serovars from poultry in Nigeria

    Jibril, A. H., Okeke, I. N., Dalsgaard, Anders, Menéndez, V. G. & Olsen, John Elmerdahl, 2021, In: Antibiotics. 10, 2, p. 1-22 22 p., 99.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Human papillomavirus vaccination and all-cause morbidity in adolescent girls: a cohort study of absence from school due to illness

    Hviid, A., Thorsen, N. M., Thomsen, L. N., Møller, F. T., Wiwe, A., Frisch, M., Valentiner-Branth, P., Rytter, D. & Mølbak, Kåre, 2021, In: International Journal of Epidemiology. 50, 2, p. 518-526 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Identification of Novel Phage Resistance Mechanisms in Campylobacter jejuni by Comparative Genomics

    Sørensen, Martine Camilla Holst, Gencay, Y. E., Fanger, F., Chichkova, M. A. T., Mazúrová, M., Klumpp, J., Nielsen, E. M. & Brøndsted, Lone, 2021, In: Frontiers in Microbiology. 12, 780559.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Identification of Potential Citrate Metabolism Pathways in Carnobacterium maltaromaticum

    Li, H., Ramia, N. E., Borges, F., Revol-Junelles, A., Vogensen, Finn Kvist & Leisner, Jørgen, 2021, In: Microorganisms. 9, 10, 2169.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Identification of cutaneous fungi and mites in adult atopic dermatitis: analysis by targeted 18S rRNA amplicon sequencing

    Edslev, S. M., Andersen, P. S., Agner, Tove, Saunte, Ditte Marie, Ingham, A. C., Johannesen, T. B. & Clausen, M. L., 2021, In: BMC Microbiology. 21, 1, 8 p., 72.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Inactivation of Cryptosporidium parvum oocysts and faecal indicator bacteria in cattle slurry by addition of ammonia

    Petersen, H. H., Dalsgaard, Anders, Vinneras, B., Jensen, Lars Stoumann, Le, T. T. A., Petersen, M. A., Enemark, H. L. & Forslund, A., 2021, In: Journal of Applied Microbiology. 130, 5, p. 1745-1757

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Increased transmissibility of SARS-CoV-2 lineage B.1.1.7 by age and viral load

    Lyngse, Frederik Plesner, Mølbak, Kåre, Skov, R. L., Christiansen, L. E., Mortensen, Laust Hvas, Albertsen, M., Møller, C. H., Krause, Tyra Grove, Rasmussen, M., Michaelsen, T. Y., Voldstedlund, M., Fonager, J., Steenhard, N., Kirkeby, Carsten & Danish Covid-19 Genome Consortium, D. C. G. C., 2021, In: Nature Communications. 12, 8 p., 7251.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Large-Scale Staphylococcus aureus Foodborne Disease Poisoning Outbreak among Primary School Children

    Le, H. H. T., Dalsgaard, Anders, Andersen, P. S., Nguyen, H. M., Ta, Y. T. & Nguyen, T. T., 2021, In: Microbiology Research. 12, p. 43-52

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Learning From Mistakes: The Role of Phages in Pandemics

    Alsaadi, Ahlam Musaibeh M, Beamud, B., Easwaran, M., Abdelrahman, F., El-Shibiny, A., Alghoribi, M. F. & Domingo-Calap, P., 2021, In: Frontiers in Microbiology. 12, 653107.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Looking into the future of phage-based control of zoonotic pathogens in food and animal production

    Gambino, Michela & Brøndsted, Lone, 2021, In: Current Opinion in Biotechnology. 68, p. 96-103 8 p.

    Research output: Contribution to journalReviewResearchpeer-review

  13. Published

    Magnetic nanomaterials as biocatalyst carriers for biomass processing: Immobilization strategies, reusability, and applications

    Mariño, M. A., Fulaz Silva, Stephanie & Tasic, L., 2021, In: Magnetochemistry. 7, 10, 22 p., 133.

    Research output: Contribution to journalReviewResearchpeer-review

  14. Published

    Modernising meat inspection of pigs – A review of the Danish process from 2006-2020

    Alban, L., Petersen, J. V., Bækbo, A. K., Pedersen, T. Ø., Kruse, Amanda Brinch, Pacheco, G. & Larsen, M. H., 2021, In: Food Control. 119, 107450.

    Research output: Contribution to journalReviewResearchpeer-review

  15. Published

    Moving objects by imagination? Amount of finger movement and pendulum length determine success in the Chevreul pendulum illusion

    Cantergi, D., Awasthi, B. & Friedman, J., 2021, In: Human Movement Science. 80, 9 p., 102879.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Peptide/β-Peptoid Hybrids with Activity against Vancomycin-Resistant Enterococci: Influence of Hydrophobicity and Structural Features on Antibacterial and Hemolytic Properties

    Vestergaard, M., Skive, Bolette, Domraceva, I., Ingmer, Hanne & Franzyk, Henrik, 2021, In: International Journal of Molecular Sciences. 22, 11, 5617.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Potential of novel cadaverine biosensor technology to predict shelf life of chilled yellowfin tuna (Thunnus albacares)

    Alexi, N., Hvam, J., Lund, B. W., Nsubuga, L., de Oliveira Hansen, R. M., Thamsborg, K., Lofink, F., Byrne, D. V. & Leisner, Jørgen, 2021, In: Food Control. 119, 107458.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Preliminary report of an outbreak of SARS-CoV-2 in mink and mink farmers associated with community spread, Denmark, June to November 2020

    Larsen, H. D., Fonager, J., Lomholt, F. K., Dalby, T., Benedetti, G., Kristensen, B., Urth, T. R., Rasmussen, M., Lassaunière, R., Rasmussen, T. B., Strandbygaard, B., Lohse, L., Chaine, M., Møller, K. L., Berthelsen, A. S. N., Nørgaard, S. K., Sönksen, U. W., Boklund, A. E., Hammer, A. S., Belsham, G. J. & 5 others, Krause, Tyra Grove, Mortensen, S., Bøtner, A., Fomsgaard, A. & Mølbak, Kåre, 2021, In: Eurosurveillance. 26, 5, 6 p.

    Research output: Contribution to journalReviewResearchpeer-review

  19. Published

    Proton-Pump Inhibitor Use and the Risk of Community-Associated Clostridium difficile Infection

    Inghammar, M., Svanström, H., Voldstedlund, M., Melbye, M., Hviid, A., Mølbak, Kåre & Pasternak, B., 2021, In: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 72, 12, p. e1084–e1089

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Quantification of antibiotic resistance genes in wildlife ungulates in Ngorongoro Conservation area and Mikumi National Park, Tanzania

    Katakweba, A. A. S. & Olsen, J. E., 2021, In: Tanzania Veterinary Journal. 36, 2, p. 1-10

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Rearrangement of Thiodepsipeptides by S → N Acyl Shift Delivers Homodetic Autoinducing Peptides

    Gless, B. H., Bejder, Benjamin Svejdal, Monda, F., Bojer, Martin Saxtorph, Ingmer, Hanne & Olsen, Christian Adam, 2021, In: Journal of the American Chemical Society. 143, 28, p. 10514–10518

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Risk of hospitalisation associated with infection with SARS-CoV-2 lineage B.1.1.7 in Denmark: an observational cohort study

    Bager, P., Wohlfahrt, J., Fonager, J., Rasmussen, M., Albertsen, M., Michaelsen, T. Y., Møller, C. H., Ethelberg, Steen, Legarth, R., Button, M. S. F., Gubbels, S., Voldstedlund, M., Mølbak, Kåre, Skov, R. L., Fomsgaard, A., Krause, T. G. & The Danish Covid-19 Genome Consortium, T. D. C. G. C., 2021, In: The Lancet Infectious Diseases. 21, 11, p. 1507-1517 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection Fatality Rate among Elderly Danes: A Cross-sectional Study on Retired Blood Donors

    Pedersen, O. B., Nissen, J., Dinh, K. M., Schwinn, M., Kaspersen, K. A., Boldsen, J. K., Didriksen, M., Dowsett, J., Sørensen, E., Thørner, L. W., Larsen, M. A. H., Grum-Schwensen, B., Sækmose, S., Paulsen, I. W., Frisk, N. L. S., Brodersen, T., Vestergaard, L. S., Rostgaard, K., Mølbak, K., Skov, R. L. & 3 others, Erikstrup, C., Ullum, H. & Hjalgrim, Henrik, 2021, In: Clinical Infectious Diseases. 73, 9, p. E2962-E2969

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Sex-differences in COVID-19 associated excess mortality is not exceptional for the COVID-19 pandemic

    Nielsen, J., Nørgaard, S. K., Lanzieri, G., Vestergaard, L. S. & Mølbak, Kåre, 2021, In: Scientific Reports. 11, 9 p., 20815.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Spontaneous Phage Resistance in Avian Pathogenic Escherichia coli

    Sørensen, P. E., Baig, S., Stegger, M., Ingmer, Hanne, Garmyn, A. & Butaye, P., 2021, In: Frontiers in Microbiology. 12, 782757.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Staphylococcal ClpXP protease targets the cellular antioxidant system to eliminate fitness-compromised cells in stationary phase

    Alqarzaee, A. A., Chaudhari, S. S., Islam, M. M., Kumar, V., Zimmerman, M. C., Saha, R., Bayles, K. W., Frees, Dorte & Thomas, V. C., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 47, e2109671118.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Staphylococcal Phages Adapt to New Hosts by Extensive Attachment Site Variability

    Leinweber, H., Sieber, R. N., Larsen, J., Stegger, M. & Ingmer, Hanne, 2021, In: mBio. 12, 6, e02259-21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Staphylococcal communities on skin are associated with atopic dermatitis and disease severity.

    Edslev, S. M., Olesen, C. M., Nørreslet, L. B., Ingham, A. C., Iversen, S., Lilje, B., Clausen, M. L., Jensen, J. S., Stegger, M., Agner, Tove & Andersen, P. S., 2021, In: Microorganisms. 9, 2, p. 1-17 17 p., 432.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Subtypes of tail spike proteins predicts the host range of Ackermannviridae phages

    Sørensen, Anders Nørgaard, Woudstra, Cedric Folkert Julien, Sørensen, Martine Camilla Holst & Brøndsted, Lone, 2021, In: Computational and Structural Biotechnology Journal. 19, p. 4854-4867 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Targeting the ATP synthase in Staphylococcus aureus small colony variants, Streptococcus pyogenes and pathogenic fungi

    Vestergaard, M., Roshanak, S. & Ingmer, Hanne, 2021, In: Antibiotics. 10, 4, 376.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    The Incidence, Intensity, and Risk Factors for Soil Transmissible Helminthes Infections among Waste Handlers in a Large Coastal Periurban Settlement in Southern Ghana

    Kretchy, J. P., Dzodzomenyo, M., Ayi, I., Dwomoh, D., Agyabeng, K., Konradsen, Flemming & Dalsgaard, Anders, 2021, In: Journal of Environmental and Public Health. 2021, 12 p., 5205793.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    The Novel Membrane-Associated Auxiliary Factors AuxA and AuxB Modulate β-lactam Resistance in MRSA by stabilizing Lipoteichoic Acids

    Mikkelsen, K., Sirisarn, W., Alharbi, O., Alharbi, M., Liu, H., Nøhr-Meldgaard, K., Mayer, K., Vestergaard, M., Gallagher, L. A., Derrick, J. P., McBain, A. J., Biboy, J., Vollmer, W., O'Gara, J. P., Grunert, T., Ingmer, Hanne & Xia, G., 2021, In: International Journal of Antimicrobial Agents. 57, 3, 106283.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    The Tetracycline Resistance Gene, tet(W) in Bifidobacterium animalis subsp. lactis Follows Phylogeny and Differs From tet(W) in Other Species

    Nøhr-Meldgaard, K., Struve, C., Ingmer, Hanne & Agersø, Marie Yvonne Feraren, 2021, In: Frontiers in Microbiology. 12, 658943.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    The prevalence of staphylococcus aureus and the occurrence of mrsa cc398 in monkey feces in a zoo park in eastern China

    Tang, Y., Qiao, Z., Wang, Z., Li, Y., Ren, J., Wen, L., Xu, X., Yang, J., Yu, C., Meng, C., Ingmer, Hanne, Li, Q. & Jiao, X., 2021, In: Animals. 11, 3, p. 1-8 8 p., 732.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    The tombstones at the Monumental Cemetery of Milano select for a specialized microbial community

    Gambino, Michela, Lepri, G., Štovícek, A., Ghazayarn, L., Villa, F., Gillor, O. & Cappitelli, F., 2021, In: International Biodeterioration and Biodegradation. 164, 105298.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    To pray in four directions: Understanding Vietnamese farmers' shrimp health management practices

    Tran, K. C., Dalsgaard, Anders, Van, P. T. & Tersbøl, Britt Pinkowski, 2021, In: Aquaculture. 536, 736406.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Wearing occlusive gloves increases the density of staphylococcus aureus in patients with hand eczema

    Nørreslet, L. B., Edslev, S. M., Flachs, E. M., Ebbehøj, N. E., Andersen, P. S. & Agner, Tove, 2021, In: Acta Dermato-Venereologica. 101, 8, adv00515.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Assessing the value of bacteriological examination as a diagnostic tool in relation to meat inspection in cattle

    Kogka, E., Larsen, M. H., Poulsen, M. K., Petersen, J. V., Vester, C. T. & Alban, L., 2 Jan 2021, In: International Journal of Food Microbiology. 338, 108997.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Association between SARS-CoV-2 Transmissibility, Viral Load, and Age in Households

    Lyngse, Frederik Plesner, Mølbak, Kåre, Franck, K. T., Nielsen, C., Skov, R. L., Voldstedlund, M., Cohen, A. S. & Kirkeby, Carsten, 5 Mar 2021.

    Research output: Working paperPreprintResearch

  40. Published

    Characterization of the genetic switch from phage ɸ13 important for Staphylococcus aureus colonization in humans

    Kristensen, C. S., Varming, A. K., Leinweber, H. A. K., Hammer, K., Lo Leggio, Leila, Ingmer, Hanne & Kilstrup, M., 1 Oct 2021, In: MicrobiologyOpen. 10, 5, 22 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. 2022
  42. Published

    Salmonella Salamae and S. Waycross isolated from Nile perch in Lake Victoria show limited human pathogenic potential

    Hounmanou, Yaovi Mahuton Gildas, Baniga, Z., García, V. & Dalsgaard, Anders, 2022, In: Scientific Reports. 12, 11 p., 4229.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    A European survey on post-mortem inspection of finishing pigs: Total condemnation criteria to declare meat unfit for human consumption

    Vieira-Pinto, M., Langkabel, N., Santos, S., Alban, L., Laguna, J. G., Blagojevic, B., Meemken, D., Bonardi, S., Antunović, B., Ghidini, S., Maurer, P., Alvseike, O. & Laukkanen-Ninios, R., 2022, In: Research in Veterinary Science. 152, p. 72-82 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    A bottom-up view of antimicrobial resistance transmission in developing countries

    Ikhimiukor, O. O., Odih, Erkison Ewomazino, Donado-Godoy, P. & Okeke, I. N., 2022, In: Nature Microbiology. 7, 6, p. 757-765 9 p.

    Research output: Contribution to journalReviewResearchpeer-review

  45. Published

    A porcine model of subcutaneous Staphylococcus aureus infection: a pilot study

    Nielsen, O. L., Mellergaard, M., Frees, Dorte, Larsen, M. N., Skov, Søren, Olsen, Lisbeth Høier & Reimann, Maria Josefine, 2022, In: APMIS - Journal of Pathology, Microbiology and Immunology. 130, 7, p. 359-370

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories

    Fait, A., Seif, Y., Mikkelsen, K., Poudel, S., Wells, J. M., Palsson, B. O. & Ingmer, Hanne, 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 30, e2118262119.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Additional post-mortem inspection procedures and laboratory methods as supplements for visual meat inspection of finishing pigs in Europe—Use and variability

    Laukkanen-Ninios, R., Ghidini, S., Gómez Laguna, J., Langkabel, N., Santos, S., Maurer, P., Meemken, D., Alban, L., Alvseike, O. & Vieira-Pinto, M., 2022, In: Journal fur Verbraucherschutz und Lebensmittelsicherheit. 17, p. 363–375

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Adverse SARS-CoV-2-associated outcomes among people experiencing social marginalisation and psychiatric vulnerability: A population-based cohort study among 4,4 million people

    Nilsson, S. F., Laursen, T. M., Osler, Merete, Hjorthøj, Carsten, Benros, Michael Eriksen, Ethelberg, Steen, Mølbak, Kåre & Nordentoft, Merete, 2022, In: The Lancet Regional Health - Europe. 15 p., 100421.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Characterisation of Salmonella enteritidis ST11 and ST1925 Associated with Human Intestinal and Extra-Intestinal Infections in Singapore

    Aung, K. T., Khor, W. C., Ong, K. H., Tan, W. L., Wong, Z. N., Oh, J. Q., Wong, W. K., Tan, B. Z. Y., Maiwald, M., Tee, N. W. S., Barkham, T., Koh, T. H., Dalsgaard, Anders, Chen, S. L., Schlundt, J. & Ng, L. C., 2022, In: International Journal of Environmental Research and Public Health. 19, 9, 5671.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Characterization of Escherichia coli and other bacteria isolated from condemned broilers at a Danish abattoir

    Alfifi, Ahmed Eassa H, Christensen, Jens Peter, Hounmanou, Yaovi Mahuton Gildas, Sandberg, M. & Dalsgaard, Anders, 2022, In: Frontiers in Microbiology. 13, 13 p., 1020586.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Determination of an optimal ELISA cut-off for the diagnosis of Toxoplasma gondii infection in pigs using Bayesian latent class modelling of data from multiple diagnostic tests

    Olsen, Abbey , Nielsen, H. V., Alban, L., Houe, Hans, Jensen, T. B. & Denwood, Matt, 2022, In: Preventive Veterinary Medicine. 201, 105606.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Dietary Risk Assessment Due to the Consumption of Polycyclic Aromatic Hydrocarbon in Two Commonly Consumed Street Vended Foods

    Ankar-Brewoo, G. M., Darko, G., Abaidoo, R. C., Dalsgaard, Anders, Johnson, P. N., Ellis, W. O. & Brimer, L., 2022, In: Polycyclic Aromatic Compounds. 42, 5, p. 2151-2161

    Research output: Contribution to journalJournal articleResearchpeer-review

  53. Published

    Differences in code terminology and frequency of findings in meat inspection of finishing pigs in seven European countries

    Alban, L., Vieira-Pinto, M., Meemken, D., Maurer, P., Ghidini, S., Santos, S., Laguna, J. G., Laukkanen-Ninios, R., Alvseike, O. & Langkabel, N., 2022, In: Food Control. 132, 108394.

    Research output: Contribution to journalJournal articleResearchpeer-review

  54. Published

    Effect of vaccination on household transmission of SARS-CoV-2 Delta variant of concern

    Lyngse, Frederik Plesner, Mølbak, Kåre, Denwood, Matt, Christiansen, L. E., Møller, C. H., Rasmussen, M., Cohen, A. S., Stegger, M., Fonager, J., Sieber, R. N., Ellegaard, K. M., Nielsen, C. & Kirkeby, Carsten, 2022, In: Nature Communications. 13, 1, 3764.

    Research output: Contribution to journalJournal articleResearchpeer-review

  55. Published

    Estimating the true seroprevalence of Toxoplasma gondii in Danish pigs

    Olsen, Abbey , Sandberg, M., Houe, Hans, Nielsen, H. V., Denwood, Matt & Alban, L. M., 2022, 16th International Symposium of Veterinary Epidemiology and Economics: Connecting Animals, People, and their shared environments - Abstract book. p. 453 1 p. 36

    Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsResearchpeer-review

  56. Published

    Excess all-cause mortality in the USA and Europe during the COVID-19 pandemic, 2020 and 2021

    Rossen, L. M., Nørgaard, S. K., Sutton, P. D., Krause, Tyra Grove, Ahmad, F. B., Vestergaard, L. S., Mølbak, Kåre, Anderson, R. N. & Nielsen, J., 2022, In: Scientific Reports. 12, 18559.

    Research output: Contribution to journalJournal articleResearchpeer-review

  57. Published

    Fecal Shedding of Multidrug Resistant Escherichia coli Isolates in Dogs Fed with Raw Meat-Based Diets in Brazil

    Ramos, C. P., Kamei, C. Y. I., Viegas, F. M., de Melo Barbieri, J., Cunha, J. L. R., Hounmanou, Yaovi Mahuton Gildas, Coura, F. M., Santana, J. A., Lobato, F. C. F., Bojesen, Anders Miki & Silva, R. O. S., 2022, In: Antibiotics. 11, 4, 534.

    Research output: Contribution to journalJournal articleResearchpeer-review

  58. Published

    Finding New Fundamental Pieces for the Bacterial Cell Division Puzzle

    Frees, Dorte & Ingmer, Hanne, 2022, In: mBio. 13, 4, e0073722.

    Research output: Contribution to journalJournal articleResearchpeer-review

  59. Published

    From Alpha Diversity to Zzz: Interactions among sleep, the brain, and gut microbiota in the first year of life

    Schoch, S. F., Castro-Mejía, J. L., Krych, Lukasz, Leng, B., Kot, Witold, Kohler, M., Huber, R., Rogler, G., Biedermann, L., Walser, J. C., Nielsen, Dennis Sandris & Kurth, S., 2022, In: Progress in Neurobiology. 209, 11 p., 102208.

    Research output: Contribution to journalJournal articleResearchpeer-review

  60. Published

    Genome Sequences of 16 Escherichia coli Bacteriophages Isolated from Wastewater, Pond Water, Cow Manure, and Bird Feces

    Vitt, Amira Ruslanovna, Ahern, S. J., Gambino, Michela, Sørensen, Martine Camilla Holst & Brøndsted, Lone, 2022, In: Microbiology resource announcements. 11, 10

    Research output: Contribution to journalJournal articleResearchpeer-review

  61. Published

    Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

    Munk, P., Brinch, C., Møller, F. D., Petersen, T. N., Hendriksen, R. S., Seyfarth, A. M., Kjeldgaard, J. S., Svendsen, C. A., van Bunnik, B., Berglund, F., Bego, A., Power, P., Rees, C., Lambrinidis, D., Neilson, E. H. J., Gibb, K., Coventry, K., Collignon, P., Cassar, S., Allerberger, F. & 31 others, Begum, A., Hossain, Z. Z., Worrell, C., Vandenberg, O., Pieters, I., Victorien, D. T., Gutierrez, A. D. S., Soria, F., Grujić, V. R., Mazalica, N., Rahube, T. O., Tagliati, C. A., Rodrigues, D., Oliveira, G., de Souza, L. C. R., Ivanov, I., Juste, B. I., Oumar, T., Sopheak, T., Vuthy, Y., Ngandijo, A., Nzouankeu, A., Olivier, Z. A. A. J., Yost, C. K., Hansen, L. T., Jensen, P. E., Parimannan, S., Hounmanou, Yaovi Mahuton Gildas, Thomsen, J., Aarestrup, F. M. & Global Sewage Surveillance Consortium, G. S. S. C., 2022, In: Nature Communications. 13, 16 p., 7251.

    Research output: Contribution to journalJournal articleResearchpeer-review

  62. Published

    Genomic analysis of the zoonotic ST73 lineage containing avian and human extraintestinal pathogenic Escherichia coli (ExPEC)

    Becker Simoes Saidenberg, André, van Vliet, A. H. M., Stegger, M., Johannesen, T. B., Semmler, T., Cunha, M., C. de O. Silveira, A., Kuroki Anzai, E., C.A. Scaletsky, I., Dalsgaard, Anders, La Ragione, R. M. & Knöbl, T., 2022, In: Veterinary Microbiology. 267, 109372.

    Research output: Contribution to journalJournal articleResearchpeer-review

  63. Published

    Genomic and Phenotypic Insights for Toxigenic Clinical Vibrio cholerae O141

    Hounmanou, Yaovi Mahuton Gildas, Sit, B., Fakoya, B., Waldor, M. K. & Dalsgaard, Anders, 2022, In: Emerging Infectious Diseases . 28, 3, p. 617-624 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  64. Published

    Household transmission of SARS-CoV-2 Omicron variant of concern subvariants BA.1 and BA.2 in Denmark

    Lyngse, Frederik Plesner, Kirkeby, Carsten, Denwood, Matt, Christiansen, L. E., Mølbak, Kåre, Holten Møller, C., Skov, R. L., Krause, Tyra Grove, Rasmussen, M., Sieber, R., Johannesen, T. B., Lillebaek, Troels, Fonager, J., Fomsgaard, A., Møller, F. T., Stegger, M., Overvad, M., Spiess, K. & Mortensen, Laust Hvas, 2022, In: Nature Communications. 13, 7 p., 5760 .

    Research output: Contribution to journalJournal articleResearchpeer-review

  65. Published

    Household transmission of the SARS-CoV-2 Omicron variant in Denmark

    Lyngse, Frederik Plesner, Mortensen, Laust Hvas, Denwood, Matt, Christiansen, L. E., Møller, C. H., Skov, R. L., Spiess, K., Fomsgaard, A., Lassaunière, R., Rasmussen, M., Stegger, M., Nielsen, C., Sieber, R. N., Cohen, A. S., Møller, F. T., Overvad, M., Mølbak, Kåre, Krause, Tyra Grove & Kirkeby, Carsten, 2022, In: Nature Communications. 13, 5573.

    Research output: Contribution to journalJournal articleResearchpeer-review

  66. Published

    Impact of the Gram-Negative-Selective Inhibitor MAC13243 on In Vitro Simulated Gut Microbiota

    Svanberg Frisinger, Frida, Pirolo, Mattia, Ng, D. Y. K., Mao, Xiaotian, Nielsen, Dennis Sandris & Guardabassi, Luca, 2022, In: Pharmaceuticals. 15, 6, 731.

    Research output: Contribution to journalJournal articleResearchpeer-review

  67. Published

    Intrinsic tet(L) sub-class in Bacillus velezensis and Bacillus amyloliquefaciens is associated with a reduced susceptibility toward tetracycline

    Nøhr-Meldgaard, K., Struve, C., Ingmer, Hanne & Agersø, Marie Yvonne Feraren, 2022, In: Frontiers in Microbiology. 13, 966016.

    Research output: Contribution to journalJournal articleResearchpeer-review

  68. Published

    Investigating ways of detecting and handling findings indicating prior septicaemia in bovines

    Petersen, J. V., Abildgaard, K. S., Poulsen, M. K. & Alban, L., 2022, In: Food Control. 137, 108901.

    Research output: Contribution to journalJournal articleResearchpeer-review

  69. Published

    Molecular epidemiology of the SARS-CoV-2 variant Omicron BA.2 sub-lineage in Denmark, 29 November 2021 to 2 January 2022

    Fonager, J., Bennedbæk, M., Bager, P., Wohlfahrt, J., Ellegaard, K. M., Ingham, A. C., Edslev, S. M., Stegger, M., Sieber, R. N., Lassauniere, R., Fomsgaard, A., Lillebaek, T., Svarrer, C. W., Møller, F. T., Møller, C. H., Legarth, R., Sydenham, T. V., Steinke, K., Paulsen, S. J., Castruita, J. A. S. & 15 others, Schneider, Uffe Vest, Schouw, C. H., Nielsen, X. C., Overvad, M., Nielsen, R. T., Marvig, R. L., Pedersen, M. S., Nielsen, L., Nilsson, L. L., Bybjerg-Grauholm, J., Tarpgaard, I. H., Ebsen, T. S., Lam, J. U. H., Gunalan, V. & Rasmussen, M., 2022, In: Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin. 27, 10, 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  70. Published

    Nationwide study on SARS-CoV-2 transmission within households from lockdown to reopening, Denmark, 27 February 2020 to 1 August 2020

    Lyngse, Frederik Plesner, Kirkeby, Carsten, Halasa, T., Andreasen, V., Skov, R. L., Møller, F. T., Krause, Tyra Grove & Mølbak, Kåre, 2022, In: Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin. 27, 6, p. 1-12

    Research output: Contribution to journalJournal articleResearchpeer-review

  71. Published

    Non-invasive neurostimulation modulates processing of spatial frequency information in rapid perception of faces

    Awasthi, B., 2022, In: Attention, Perception, and Psychophysics. 84, 1, p. 150-160 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  72. Published

    Novel cadaverine non-invasive biosensor technology for the prediction of shelf life of modified atmosphere packed pork cutlets

    Alexi, N., Thamsborg, K., Hvam, J., Lund, B. W., Nsubuga, L., de Oliveira Hansen, R. M., Byrne, D. V. & Leisner, Jørgen, 2022, In: Meat Science. 192, 108876.

    Research output: Contribution to journalJournal articleResearchpeer-review

  73. Published

    Observed protection against SARS-CoV-2 reinfection following a primary infection: A Danish cohort study among unvaccinated using two years of nationwide PCR-test data

    Michlmayr, D., Hansen, C. H., Gubbels, S. M., Valentiner-Branth, P., Bager, P., Obel, Niels, Drewes, B., Møller, C. H., Møller, F. T., Legarth, R., Mølbak, Kåre & Ethelberg, Steen, 2022, In: The Lancet Regional Health - Europe. 20, 100452.

    Research output: Contribution to journalJournal articleResearchpeer-review

  74. Published

    PREPAREDNESS FOR POTENTIAL FUTURE SEROLOGICAL SURVEILLANCE OF TOXOPLASMA GONDII IN THE DANISH PIG POPULATION: A REVIEW OF LATEST EPIDEMIOLOGICAL STUDIES FROM DENMARK

    Olsen, Abbey , Houe, Hans, Nielsen, H. V., Denwood, Matt, Sandberg, M., Pires, S. M. & Alban, L. M., 2022, p. 173-176.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  75. Published
  76. Published

    Prevalence of antibiotic-resistant bacteria amongst dogs in Africa: A meta-analysis review

    Yaovi, A. B., Sessou, P., Tonouhewa, A. B. N., Hounmanou, G. Y. M., Thomson, D., Pelle, R., Farougou, S. & Mitra, A., 2022, In: Onderstepoort Journal of Veterinary Research. 89, 1, a1970.

    Research output: Contribution to journalReviewResearchpeer-review

  77. Published

    Rapid in vivo development of resistance to daptomycin in vancomycin-resistant Enterococcus faecium due to genomic alterations

    Mollerup, S., Elmeskov, C., Pinholt, M., Sejersen, T. S., Pedersen, M. S., Worning, P., Frees, Dorte & Westh, Henrik T., 2022, In: FEMS Microbiology Letters. 369, 1, 6 p., 063.

    Research output: Contribution to journalJournal articleResearchpeer-review

  78. Published

    Rectal Colonization and Nosocomial Transmission of Carbapenem-Resistant Acinetobacter baumannii in an Intensive Care Unit, Southwest Nigeria

    Odih, Erkison Ewomazino, Irek, E. O., Obadare, T. O., Oaikhena, A. O., Afolayan, A. O., Underwood, A., Adenekan, A. T., Ogunleye, V. O., Argimon, S., Dalsgaard, Anders, Aanensen, D. M., Okeke, I. N. & Aboderin, A. O., 2022, In: Frontiers in Medicine. 9, 846051.

    Research output: Contribution to journalJournal articleResearchpeer-review

  79. Published

    Risk of hospitalisation associated with infection with SARS-CoV-2 omicron variant versus delta variant in Denmark: an observational cohort study

    Bager, P., Wohlfahrt, J., Bhatt, S., Stegger, M., Legarth, R., Møller, C. H., Skov, R. L., Valentiner-Branth, P., Voldstedlund, M., Fischer, T. K., Simonsen, L., Kirkby, N. S., Thomsen, M. K., Spiess, K., Marving, E., Larsen, N. B., Lillebaek, T., Ullum, H., Mølbak, K., Krause, T. G. & 28 others, Edslev, S. M., Sieber, R. N., Ingham, A. C., Overvad, M., Agermose Gram, M., Kristensen Lomholt, F., Hallundbæk, L., Hjorth Espensen, C., Gubbels, S., Karakis, M., Lauenborg Møller, K., Schytte Olsen, S., Harboe, Zitta F B Barrella, Klint Johannesen, C., van Wijhe, M., Holler, J. G., Dessau, R. B. C., Barfred Friis, M., Fuglsang-Damgaard, D., Pinholt, M., Vognbjerg Sydenham, T., Coia, J. E., Marmolin, E. S., Fomsgaard, A., Fonager, J., Rasmussen, M., Cohen, A. & the Omicron-Delta study group, T. O. S. G., 2022, In: The Lancet Infectious Diseases. 22, 7, p. 967-976 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  80. Published

    Scientists’ Assessments of Research on Lactic Acid Bacterial Bacteriocins 1990–2010

    Martinenghi, Laura Daniela & Leisner, Jørgen, 2022, In: Frontiers in Microbiology. 13, 908336.

    Research output: Contribution to journalJournal articleResearchpeer-review

  81. Published

    Screening for Highly Transduced Genes in Staphylococcus aureus Revealed Both Lateral and Specialized Transduction

    Bowring, Janine Zara, Su, Y., Alsaadi, Ahlam Musaibeh M, Svenningsen, Sine Lo, Parkhill, J. & Ingmer, Hanne, 2022, In: Microbiology Spectrum. 10, 1, e02423-21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  82. Published

    Soluble C-Type Lectin-Receptor Ligands Stimulate ROS Production in Dendritic Cells and Potentiate Killing of MRSA as Well as the MRSA Induced IL-12 Production

    Eld, H. M. S., Johnsen, Peter Riber, Nielsen, E. M., Jørgensen, F. Z., Lindstrøm-Svendsen, M., Baldry, M., Ingmer, Hanne & Frøkiær, Hanne, 2022, In: Frontiers in Immunology. 13, 845881.

    Research output: Contribution to journalJournal articleResearchpeer-review

  83. Published

    Survival of hospital- and community-associated Enterococcus faecium following exposure to in-use concentrations of the biocide sodium dichloroisocyanurate (NaDCC)

    Skive, Bolette, Lawaetz, A. C., Hammerum, A. M., Hasman, H., Pinholt, M., Jensen, C. S., Knudsen, J. D., Kjerulf, A. & Ingmer, Hanne, 2022, In: Journal of Global Antimicrobial Resistance. 29, p. 281-288 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  84. Published

    Targeting the ATP synthase in bacterial and fungal pathogens: beyond Mycobacterium tuberculosis

    Vestergaard, M., Bald, D. & Ingmer, Hanne, 2022, In: Journal of Global Antimicrobial Resistance. 29, p. 29-41 13 p.

    Research output: Contribution to journalReviewResearchpeer-review

  85. Published

    The Bacillus phage SPβ and its relatives: a temperate phage model system reveals new strains, species, prophage integration loci, conserved proteins and lysogeny management components

    Kohm, K., Floccari, V. A., Lutz, Veronika Theresa, Nordmann, B., Mittelstädt, C., Poehlein, A., Dragoš, A., Commichau, F. M. & Hertel, R., 2022, In: Environmental Microbiology. 24, 4, p. 2098-2118 21 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  86. Published

    The menaquinone pathway is important for susceptibility of Staphylococcus aureus to the antibiotic adjuvant, cannabidiol

    Wassmann, C. S., Rolsted, A. P., Lyngsie, M. C., Torres-Puig, S., Kronborg, T., Vestergaard, M., Ingmer, Hanne, Pontoppidan, S. P. & Klitgaard, J. K., 2022, In: Microbiological Research. 257, 126974.

    Research output: Contribution to journalJournal articleResearchpeer-review

  87. Published

    Vaccination against SARS-CoV-2 infection among vulnerable and marginalised population groups in Denmark: A nationwide population-based study

    Nilsson, S. F., Laursen, T. M., Osler, Merete, Hjorthøj, Carsten, Benros, Michael Eriksen, Ethelberg, Steen, Mølbak, Kåre & Nordentoft, Merete, 2022, In: The Lancet Regional Health - Europe. 16, 14 p., 100355.

    Research output: Contribution to journalJournal articleResearchpeer-review

  88. Published

    Assessment of risk to humans related to Salmonella from bile on pig carcasses

    Alban, L., Poulsen, M. K., Petersen, J. V., Lindegaard, L. L., Meinert, L., Koch, A. G. & Møgelmose, V., Jan 2022, In: Food Control. 131, 10 p., 108415.

    Research output: Contribution to journalJournal articleResearchpeer-review

  89. Published

    Transmission of SARS-CoV-2 Omicron VOC subvariants BA.1 and BA.2: Evidence from Danish Households

    Lyngse, Frederik Plesner, Kirkeby, Carsten, Denwood, Matt, Christiansen, L. E., Mølbak, Kåre, Møller, C. H., Skov, R. L., Krause, Tyra Grove, Rasmussen, M., Sieber, R. N., Johannesen, T. B., Lillebaek, Troels, Fonager, J., Fomsgaard, A., Møller, F. T., Stegger, M., Overvad, M., Spiess, K. & Mortensen, Laust Hvas, 30 Jan 2022, 2 p.

    Research output: Other contributionResearch

  90. 2023
  91. Published

    Clostridium botulinum type C, D, C/D, and D/C: An update

    Meurens, F., Carlin, F., Federighi, M., Filippitzi, M. E., Fournier, M., Fravalo, P., Ganière, J. P., Grisot, L., Guillier, L., Hilaire, D., Kooh, P., Le Bouquin-Leneveu, S., Le Maréchal, C., Mazuet, C., Morvan, H., Petit, K., Vaillancourt, J. P. & Woudstra, Cedric Folkert Julien, 2023, In: Frontiers in Microbiology. 13, 1099184.

    Research output: Contribution to journalReviewResearchpeer-review

  92. Published

    Salmonella enterica prevalence, serotype diversity, antimicrobial resistance and control in the European pork production chain

    Roasto, M., Bonardi, S., Mäesaar, M., Alban, L., Gomes-Neves, E., Vieira-Pinto, M., Vågsholm, I., Elias, T., Lindegaard, L. L. & Blagojevic, B., 2023, In: Trends in Food Science and Technology. 131, p. 210-219 10 p.

    Research output: Contribution to journalReviewResearchpeer-review

  93. Published

    Salmonella Heidelberg and Salmonella Minnesota in Brazilian broilers: Genomic characterization of third-generation cephalosporin and fluoroquinolone-resistant strains

    Becker Simoes Saidenberg, André, Franco, L. S., Reple, J. N., Hounmanou, Yaovi Mahuton Gildas, Casas, M. R. T., Cardoso, B., Esposito, F., Lincopan, N., Dalsgaard, Anders, Stegger, M. & Knöbl, T., 2023, In: Environmental Microbiology Reports. 15, 2, p. 119-128

    Research output: Contribution to journalJournal articleResearchpeer-review

  94. Published

    A Clinically Selected Staphylococcus aureus clpP Mutant Survives Daptomycin Treatment by Reducing Binding of the Antibiotic and Adapting a Rod-Shaped Morphology

    Xu, Lijuan, Henriksen, C., Mebus, Viktor Hundtofte, Guérillot, R., Petersen, A., Jacques, N., Jiang, J. H., Derks, R. J. E., Sánchez-López, E., Giera, M., Leeten, K., Stinear, T. P., Oury, C., Howden, B. P., Peleg, A. Y. & Frees, Dorte, 2023, In: Antimicrobial Agents and Chemotherapy. 67, 6, 18 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  95. Published

    A Cross-Sectional Study of SARS-CoV-2 Antibodies and Risk Factors for Seropositivity in Staff in Day Care Facilities and Preschools in Denmark

    Fogh, K., Eriksen, A. R. R., Larsen, T. G., Hasselbalch, R. B., Bundgaard, H., Scharff, B., Nielsen, S. D., Jørgensen, C. S., Erikstrup, C., Østergaard, L., Ellermann-Eriksen, S., Andersen, B., Nielsen, H., Johansen, I. S., Wiese, L., Hindhede, L., Mikkelsen, S., Sækmose, S. G., Aagaard, B., Holm, D. K. & 16 others, Harritshøj, Lene Holm, Simonsen, L., Fischer, Thea Kølsen, Folke, Fredrik, Lippert, F., Ostrowski, Sisse Rye, Benfield, Thomas, Mølbak, Kåre, Ethelberg, Steen, Koch, A., Vangsted, A., Krause, Tyra Grove, Fomsgaard, A., Ullum, H., Skov, R. & Iversen, Kasper, 2023, In: Microbiology Spectrum. 11, 1, 11 p., e0417422.

    Research output: Contribution to journalJournal articleResearchpeer-review

  96. Published

    A Glimpse at the Anti-Phage Defenses Landscape in the Foodborne Pathogen Salmonella enterica subsp. enterica serovar Typhimurium

    Woudstra, Cedric Folkert Julien & Granier, S. A., 2023, In: Viruses. 15, 2, 333.

    Research output: Contribution to journalJournal articleResearchpeer-review

  97. Published

    A Representative Collection of Commensal Extended-Spectrum- and AmpC-β-Lactamase-Producing Escherichia coli of Animal Origin for Phage Sensitivity Studies

    Vitt, Amira Ruslanovna, Sørensen, Martine Camilla Holst, Bortolaia, V. & Brøndsted, Lone, 2023, In: PHAGE: Therapy, Applications, and Research. 4, 1, p. 35-45 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  98. Published

    Accidental delivery of pigs for slaughter prior to end of withdrawal period for antimicrobial treatment - Ways of handling

    Alban, L., Antunovic, B., Belous, M., Bērziņš, A., Bonardi, S., García-Gimeno, R. M., Jenson, I., Kautto, A. H., Majewski, M., Oorburg, D., Sakaridis, I., Sirbu, A., Vieira-Pinto, M., Vågsholm, I. & Petersen, J. V., 2023, In: Food Control. 154, 8 p., 110000.

    Research output: Contribution to journalJournal articleResearchpeer-review

  99. Published

    An Endogenous Staphylococcus aureus CRISPR-Cas System Limits Phage Proliferation and Is Efficiently Excised from the Genome as Part of the SCCmec Cassette

    Mikkelsen, K., Bowring, Janine Zara, Ng, Y. K., Svanberg Frisinger, Frida, Maglegaard, J. K., Li, Q., Sieber, R. N., Petersen, A., Andersen, P. S., Rostøl, J. T., Høyland-Kroghsbo, Nina Molin & Ingmer, Hanne, 2023, In: Microbiology Spectrum. 11, 4, e01277-23.

    Research output: Contribution to journalJournal articleResearchpeer-review

  100. Published

    Applications of computer vision systems for meat safety assurance in abattoirs: A systematic review

    Sandberg, M., Ghidini, S., Alban, L., Capobianco Dondona, A., Blagojevic, B., Bouwknegt, M., Lipman, L., Seidelin Dam, J., Nastasijevic, I. & Antic, D., 2023, In: Food Control. 150, 109768.

    Research output: Contribution to journalJournal articleResearchpeer-review

  101. Published

    Assessment of human exposure risk related to contamination of Danish sow carcasses with bile containing Salmonella

    Just, M. S., Skive, Bolette, Ingmer, Hanne, Møgelmose, V., Lindegaaard, L. L. & Alban, L., 2023, In: Preventive Veterinary Medicine. 217, 105958.

    Research output: Contribution to journalJournal articleResearchpeer-review

  102. Published

    Association between SARS-CoV-2 infection and self-harm: Danish nationwide register-based cohort study

    Erlangsen, A., Qin, P., Madsen, Trine, Hawton, K., Osler, Merete, Hjorthøj, Carsten, Benros, Michael Eriksen, Ethelberg, Steen, Mølbak, Kåre, Laursen, T. M., Nordentoft, Merete & Nilsson, S. F., 2023, In: The British journal of psychiatry : the journal of mental science. 222, 4, p. 167–174 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  103. Published

    Bacterial species diversity of traditionally ripened sheep legs from the Faroe Islands (skerpikjøt)

    Charmpi, C., Thamsborg, K. K. M., Mikalsen, S. O., Magnussen, E., Sosa Fajardo, A., Van der Veken, D., Leisner, Jørgen & Leroy, F., 2023, In: International Journal of Food Microbiology. 386, 110023.

    Research output: Contribution to journalJournal articleResearchpeer-review