Food Safety and Zoonoses

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  1. 2024
  2. Published

    Porcine respiratory coronavirus genome sequences; comparisons and relationships to transmissible gastroenteritis viruses

    Bedsted, Amalie Ehlers, Rasmussen, T. B., Martinenghi, Laura Daniela, Bøtner, A., Nauwynck, H. J. & Belsham, Graham John, 9 Apr 2024, In: Virology. 595

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Worldwide trends in underweight and obesity from 1990 to 2022: a pooled analysis of 3663 population-representative studies with 222 million children, adolescents, and adults

    NCD Risk Factor Collaboration (NCD-RisC), N. R. F. C. (., 16 Mar 2024, In: The Lancet. 403, 10431, p. 1027-1050 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Staphylococcus aureus mutants resistant to the feed-additive monensin show increased virulence and altered purine metabolism

    Warsi, O. M., Upterworth, L. M., Breidenstein, A., Lustig, U., Mikkelsen, K., Nagy, T., Szatmari, D., Ingmer, Hanne & Andersson, D. I., 2024, In: mBio. 15, 2, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Agtrevirus phage AV101 recognizes four different O-antigens infecting diverse E. coli

    Sørensen, Anders Nørgaard, Kalmár, D., Lutz, Veronika Theresa, Klein De Sousa, Victor, Taylor, Nicholas M I, Sørensen, Martine Camilla Holst & Brøndsted, Lone, 2024, In: microLife. 5, 12 p., uqad047.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    CI:Mor interactions in the lysogeny switches of Lactococcus lactis TP901-1 and Staphylococcus aureus φ13 bacteriophages

    Varming, A. K., Huang, Zhiyu, Hamad, G. M., Rasmussen, K. K., Ingmer, Hanne, Kilstrup, M. & Lo Leggio, Leila, 2024, In: Microbiome Research Reports. 3, 2, 16 p., 15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Comparison of morbidity and mortality after bloodstream infection with vancomycin-resistant versus -susceptible Enterococcus faecium: a nationwide cohort study in Denmark, 2010–2019

    Bager, P., Kähler, J., Andersson, M., Holzknecht, Barbara Juliane, Kjær Hansen, S. G., Schønning, Kristian, Nielsen, K. L., Koch, K., Pinholt, M., Voldstedlund, M., Larsen, A. R., Kristensen, B., Mølbak, Kåre, Sönksen, U. W., Skovgaard, S., Skov, R. & Hammerum, A. M., 2024, In: Emerging Microbes and Infections. 13, 1, 13 p., 2309969.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Diverse bacteriophages for biocontrol of ESBL- and AmpC-β-lactamase-producing E. coli

    Vitt, Amira Ruslanovna, Sørensen, Anders Nørgaard, Bojer, Martin Saxtorph, Bortolaia, V., Sørensen, Martine Camilla Holst & Brøndsted, Lone, 2024, In: iScience. 27, 2, 21 p., 108826.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Draft genome sequences of three Carnobacterium maltaromaticum isolates from two low pH bogs in Denmark

    Tang, Taya & Leisner, Jørgen, 2024, In: Microbiology resource announcements. 13, 1, 4 p., e00969-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Effect of dietary tall oil fatty acids and hydrolysed yeast in SNP2-positive and SNP2-negative piglets challenged with F4 enterotoxigenic Escherichia coli

    Middelkoop, A., Kettunen, H., Guan, X., Vuorenmaa, J., Tichelaar, R., Gambino, Michela, Rydal, Martin Peter & Molist, F., 2024, In: Scientific Reports. 14, 12 p., 2060.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Flagellotropic phages: common yet diverse host interaction strategies

    Gambino, Michela & Sørensen, Martine Camilla Holst, 2024, In: Current Opinion in Microbiology. 78, 7 p., 102451.

    Research output: Contribution to journal › Review › Research › peer-review

  12. Published

    Isolation and characterization of novel plasmid-dependent phages infecting bacteria carrying diverse conjugative plasmids

    Parra, B., Cockx, B., Lutz, Veronika Theresa, Brøndsted, Lone, Smets, B. F. & Dechesne, A., 2024, In: Microbiology Spectrum. 12, 1, p. e0253723

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Lack of correlation between growth, stress, and virulence phenotypes in strains of Salmonella enterica serovar Enteritidis, S. Typhimurium DT104, S. 4,12, b:- and S. Liverpool

    Olsen, John Elmerdahl, Frees, Dorte, Kyvsgaard, N. C. & Barco, L., 2024, In: Letters in Applied Microbiology. 77, 2, 9 p., ovae015.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Risk-based meat inspection and integrated meat safety assurance

    Blagojevic, B. & Alban, L., 2024, In: Food Control. 157, 3 p., 110183.

    Research output: Contribution to journal › Editorial › Research

  15. Published

    The ClpX chaperone and a hypermorphic FtsA variant with impaired self-interaction are mutually compensatory for coordinating Staphylococcus aureus cell division

    Henriksen, C., Bæk, K. T., Wacnik, K., Gallay, C., Veening, J. W., Foster, S. J. & Frees, Dorte, 2024, In: Molecular Microbiology. 121, 1, p. 98-115

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Veterinary bacteriology in Denmark from the 1880s to 2022

    Leisner, Jørgen & Larsen, J. L., 2024, In: APMIS. 132, 1, p. 31-42

    Research output: Contribution to journal › Review › Research › peer-review

  17. 2023
  18. Published

    Clostridium botulinum type C, D, C/D, and D/C: An update

    Meurens, F., Carlin, F., Federighi, M., Filippitzi, M. E., Fournier, M., Fravalo, P., Ganière, J. P., Grisot, L., Guillier, L., Hilaire, D., Kooh, P., Le Bouquin-Leneveu, S., Le Maréchal, C., Mazuet, C., Morvan, H., Petit, K., Vaillancourt, J. P. & Woudstra, Cedric Folkert Julien, 2023, In: Frontiers in Microbiology. 13, 1099184.

    Research output: Contribution to journal › Review › Research › peer-review

  19. Published

    Salmonella enterica prevalence, serotype diversity, antimicrobial resistance and control in the European pork production chain

    Roasto, M., Bonardi, S., Mäesaar, M., Alban, L., Gomes-Neves, E., Vieira-Pinto, M., Vågsholm, I., Elias, T., Lindegaard, L. L. & Blagojevic, B., 2023, In: Trends in Food Science and Technology. 131, p. 210-219 10 p.

    Research output: Contribution to journal › Review › Research › peer-review

  20. Published

    Salmonella Heidelberg and Salmonella Minnesota in Brazilian broilers: Genomic characterization of third-generation cephalosporin and fluoroquinolone-resistant strains

    Becker Simoes Saidenberg, André, Franco, L. S., Reple, J. N., Hounmanou, Yaovi Mahuton Gildas, Casas, M. R. T., Cardoso, B., Esposito, F., Lincopan, N., Dalsgaard, Anders, Stegger, M. & Knöbl, T., 2023, In: Environmental Microbiology Reports. 15, 2, p. 119-128

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    A Clinically Selected Staphylococcus aureus clpP Mutant Survives Daptomycin Treatment by Reducing Binding of the Antibiotic and Adapting a Rod-Shaped Morphology

    Xu, Lijuan, Henriksen, C., Mebus, Viktor Hundtofte, Guérillot, R., Petersen, A., Jacques, N., Jiang, J. H., Derks, R. J. E., Sánchez-López, E., Giera, M., Leeten, K., Stinear, T. P., Oury, C., Howden, B. P., Peleg, A. Y. & Frees, Dorte, 2023, In: Antimicrobial Agents and Chemotherapy. 67, 6, 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    A Cross-Sectional Study of SARS-CoV-2 Antibodies and Risk Factors for Seropositivity in Staff in Day Care Facilities and Preschools in Denmark

    Fogh, K., Eriksen, A. R. R., Larsen, T. G., Hasselbalch, R. B., Bundgaard, H., Scharff, B., Nielsen, S. D., Jørgensen, C. S., Erikstrup, C., Østergaard, L., Ellermann-Eriksen, S., Andersen, B., Nielsen, H., Johansen, I. S., Wiese, L., Hindhede, L., Mikkelsen, S., Sækmose, S. G., Aagaard, B., Holm, D. K. & 16 others, Harritshøj, Lene Holm, Simonsen, L., Fischer, Thea Kølsen, Folke, Fredrik, Lippert, F., Ostrowski, Sisse Rye, Benfield, Thomas, Mølbak, Kåre, Ethelberg, Steen, Koch, A., Vangsted, A., Krause, Tyra Grove, Fomsgaard, A., Ullum, H., Skov, R. & Iversen, Kasper, 2023, In: Microbiology Spectrum. 11, 1, 11 p., e0417422.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    A Glimpse at the Anti-Phage Defenses Landscape in the Foodborne Pathogen Salmonella enterica subsp. enterica serovar Typhimurium

    Woudstra, Cedric Folkert Julien & Granier, S. A., 2023, In: Viruses. 15, 2, 333.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    A Representative Collection of Commensal Extended-Spectrum- and AmpC-β-Lactamase-Producing Escherichia coli of Animal Origin for Phage Sensitivity Studies

    Vitt, Amira Ruslanovna, Sørensen, Martine Camilla Holst, Bortolaia, V. & Brøndsted, Lone, 2023, In: PHAGE: Therapy, Applications, and Research. 4, 1, p. 35-45 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Accidental delivery of pigs for slaughter prior to end of withdrawal period for antimicrobial treatment - Ways of handling

    Alban, L., Antunovic, B., Belous, M., Bērziņš, A., Bonardi, S., García-Gimeno, R. M., Jenson, I., Kautto, A. H., Majewski, M., Oorburg, D., Sakaridis, I., Sirbu, A., Vieira-Pinto, M., Vågsholm, I. & Petersen, J. V., 2023, In: Food Control. 154, 8 p., 110000.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    An Endogenous Staphylococcus aureus CRISPR-Cas System Limits Phage Proliferation and Is Efficiently Excised from the Genome as Part of the SCCmec Cassette

    Mikkelsen, K., Bowring, Janine Zara, Ng, Y. K., Svanberg Frisinger, Frida, Maglegaard, J. K., Li, Q., Sieber, R. N., Petersen, A., Andersen, P. S., Rostøl, J. T., Høyland-Kroghsbo, Nina Molin & Ingmer, Hanne, 2023, In: Microbiology Spectrum. 11, 4, e01277-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Applications of computer vision systems for meat safety assurance in abattoirs: A systematic review

    Sandberg, M., Ghidini, S., Alban, L., Capobianco Dondona, A., Blagojevic, B., Bouwknegt, M., Lipman, L., Seidelin Dam, J., Nastasijevic, I. & Antic, D., 2023, In: Food Control. 150, 109768.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Assessment of human exposure risk related to contamination of Danish sow carcasses with bile containing Salmonella

    Just, M. S., Skive, Bolette, Ingmer, Hanne, Møgelmose, V., Lindegaaard, L. L. & Alban, L., 2023, In: Preventive Veterinary Medicine. 217, 105958.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Association between SARS-CoV-2 infection and self-harm: Danish nationwide register-based cohort study

    Erlangsen, A., Qin, P., Madsen, Trine, Hawton, K., Osler, Merete, Hjorthøj, Carsten, Benros, Michael Eriksen, Ethelberg, Steen, Mølbak, Kåre, Laursen, T. M., Nordentoft, Merete & Nilsson, S. F., 2023, In: The British journal of psychiatry : the journal of mental science. 222, 4, p. 167–174 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Bacterial species diversity of traditionally ripened sheep legs from the Faroe Islands (skerpikjøt)

    Charmpi, C., Thamsborg, K. K. M., Mikalsen, S. O., Magnussen, E., Sosa Fajardo, A., Van der Veken, D., Leisner, Jørgen & Leroy, F., 2023, In: International Journal of Food Microbiology. 386, 110023.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Bacteriological examination in place in five European countries to assess carcass fitness for consumption during meat inspection

    Laukkanen-Ninios, R., Langkabel, N., Ghidini, S., Pikkemaat, M., Biesta-Peters, E. G., van der Ark, K. & Alban, L., 2023, In: Food Control. 153, 109946.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    CRISPR-Cas9 Shaped Viral Metagenomes Associated with Bacillus subtilis

    Kohm, K., Lutz, Veronika Theresa, Friedrich, I. & Hertel, R., 2023, Metagenomics: Methods and Protocols. Streit, W. R. & Daniel, R. (eds.). Humana Press, p. 205-212 8 p. (Methods in Molecular Biology, Vol. 2555).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  33. Published

    Cadaverine as a Potential Spoilage Indicator in Skin-Packed Beef and Modified-Atmosphere-Packed Beef

    Thamsborg, K. K. M., Lund, B. W., Byrne, D. V., Leisner, Jørgen & Alexi, N., 2023, In: Foods. 12, 24, 11 p., 4489.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Capturing systematically users' experience of evaluation tools for integrated AMU and AMR surveillance

    Alban, L., Bordier, M., Häsler, B., Collineau, L., Tomassone, L., Bennani, H., Aenishaenslin, C., Norström, M., Aragrande, M., Filippitzi, M. E., Moura, P. & Sandberg, M., 2023, In: Frontiers in Veterinary Science. 10, 1107122.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Changes in fatty acids during storage of artisanal-processed freshwater sardines (Rastrineobola argentea)

    Chaula, D., Jacobsen, C., Laswai, H. S., Chove, B. E., Dalsgaard, Anders, Mdegela, R. & Hyldig, G., 2023, In: Food Science and Nutrition. 11, 6, p. 3040-3047

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Characterisation of antimicrobial usage in Danish pigs in 2020

    Moura, P., Sandberg, M., Høg, B. B., Niza-Ribeiro, J., Nielsen, E. O. & Alban, L., 2023, In: Frontiers in Veterinary Science. 10, 1155811.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Clinical Staphylococcus aureus inhibits human T-cell activity through interaction with the PD-1 receptor

    Mellergaard, M., Skovbakke, S. L., Jepsen, S. D., Panagiotopoulou, N., Hansen, A. B. R., Tian, W., Lund, A., Høgh, R. I., Møller, S. H., Guérillot, R., Hayes, A. S., Erikstrup, L. T., Andresen, L., Peleg, A. Y., Larsen, A. R., Stinear, T. P., Handberg, A., Erikstrup, C., Howden, B. P., Goletz, S. & 2 others, Frees, Dorte & Skov, Søren, 2023, In: mBio. 14, 5, 21 p., e01349-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Clonal relatedness of coagulase-positive staphylococci among healthy dogs and dog-owners in Spain. Detection of multidrug-resistant-MSSA-CC398 and novel linezolid-resistant-MRSA-CC5

    Abdullahi, I. N., Lozano, C., Zarazaga, M., Becker Simoes Saidenberg, André, Stegger, M. & Torres, C., 2023, In: Frontiers in Microbiology. 14, 1121564.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Comparative genomic analysis of Aeromonas dhakensis and Aeromonas hydrophila from diseased striped catfish fingerlings cultured in Vietnam

    Erickson, Vera Irene, Khoi, L. M., Hounmanou, Yaovi Mahuton Gildas, Dung, T. T., Phu, T. M. & Dalsgaard, Anders, 2023, In: Frontiers in Microbiology. 14, 14 p., 1254781.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Comparative review of the nasal carriage and genetic characteristics of Staphylococcus aureus in healthy livestock: Insight into zoonotic and anthroponotic clones

    Abdullahi, I. N., Lozano, C., Becker Simoes Saidenberg, André, Latorre-Fernández, J., Zarazaga, M. & Torres, C., 2023, In: Infection, Genetics and Evolution. 109, 105408.

    Research output: Contribution to journal › Review › Research › peer-review

  41. Published

    Complete association between CHCF1 genotype and enterotoxigenic Escherichia coli F4ab-associated post-weaning diarrhea in a pig challenge trial

    Rydal, Martin Peter, Jørgensen, Claus Bøttcher, Gambino, Michela, Poulsen, Louise Ladefoged & Nielsen, Jens Peter, 2023, In: Veterinary Microbiology. 282, 109771.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Correlation of High Seawater Temperature with Vibrio and Shewanella Infections, Denmark, 2010-2018

    Hounmanou, Yaovi Mahuton Gildas, Engberg, J., Bjerre, K. D., Holt, H. M., Olesen, B., Voldstedlund, M., Dalsgaard, Anders & Ethelberg, Steen, 2023, In: Emerging Infectious Diseases. 29, 3, p. 605-608 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Cross-species communication via agr controls phage susceptibility in Staphylococcus aureus

    Yang, Jingxian, Bowring, Janine Zara, Krusche, J., Lehmann, Esther, Bejder, Benjamin Svejdal, Fulaz Silva, Stephanie, Bojer, Martin Saxtorph, Grunert, T., Peschel, A. & Ingmer, Hanne, 2023, In: Cell Reports. 42, 9, 113154.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Distribution and ecology of the generalist lactic acid bacterium Carnobacterium maltaromaticum in different freshwater habitats: Metabolic and antagonistic abilities

    Tang, Taya, Martinenghi, Laura Daniela, Hounmanou, Yaovi Mahuton Gildas & Leisner, Jørgen, 2023, In: Environmental Microbiology. 25, 12, p. 3556-3576 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    ECOPHAGE: Combating Antimicrobial Resistance Using Bacteriophages for Eco-Sustainable Agriculture and Food Systems

    García, P., Tabla, R., Anany, H., Bastias, R., Brøndsted, Lone, Casado, S., Cifuentes, P., Deaton, J., Denes, T. G., Islam, M. A., Lavigne, R., Moreno-Switt, A. I., Nakayama, N., Muñoz Madero, C., Sulakvelidze, A., Svircev, A. M., Wagemans, J., Biosca, E. G. & Rivera, D., 2023, In: Viruses. 15, 11, 18 p., 2224.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Effects of grade, smiley, and text on Danish and Finnish consumers’ perceptions of food safety inspection reports

    Vainio, A., Ollila, S., Sørensen, T. A., Kaskela, J., Finell, E., Leisner, Jørgen & Lundén, J., 2023, In: Food Control. 144, 109382.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Engineering of Salmonella Phages into Novel Antimicrobial Tailocins

    Woudstra, Cedric Folkert Julien, Sørensen, Anders Nørgaard & Brøndsted, Lone, 2023, In: Cells. 12, 22, 15 p., 2637.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Estimating the impact of low temperature on African swine fever virus transmission through contaminated environments

    Gao, Y., Boklund, Anette, Nielsen, L. H., Alban, L. & de Jong, M. C. M., 2023, In: Preventive Veterinary Medicine. 219, 105991.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Evaluation of the value of using bovine kidneys as an additional matrix in a bacteriological examination of carcass fitness for human consumption

    Abildgaard, K., Petersen, J. V., Kiel Poulsen, M. & Alban, L., 2023, In: Food Control. 153, 109928.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Evolutionary history of Staphylococcus aureus influences antibiotic resistance evolution

    Fait, A., Andersson, D. I. & Ingmer, Hanne, 2023, In: Current Biology. 33, 16, p. 3389-3397.e5

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Fluoroquinolone resistance does not facilitate phage Φ13 integration or excision in Staphylococcus aureus

    Leinweber, H., Sieber, R. N., Bojer, Martin Saxtorph, Larsen, J. & Ingmer, Hanne, 2023, In: Access microbiology. 5, 6, 19 p., 000583.v4.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Full-scale industrial phage trial targeting Salmonella on pork carcasses

    Volpi, M., Gambino, Michela, Kirkeby, K., Elsser-Gravesen, A. & Brøndsted, Lone, 2023, In: Food Microbiology. 112, 104240.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Förster Resonance Energy Transfer Assay for Investigating the Reactivity of Thioesters in Biochemistry and Native Chemical Ligation

    Gless, B. H., Schmied, S. H., Bejder, Benjamin Svejdal & Olsen, Christian Adam, 2023, In: JACS Au. 3, 5, p. 1443–1451

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Genomic Microevolution of Vibrio cholerae O1, Lake Tanganyika Basin, Africa

    Hounmanou, Yaovi Mahuton Gildas, Njamkepo, E., Rauzier, J., Gallandat, K., Jeandron, A., Kamwiziku, G., Porten, K., Luquero, F., Abedi, A. A., Rumedeka, B. B., Miwanda, B., Michael, M., Okitayemba, P. W., Saidi, J. M., Piarroux, R., Weill, F. X., Dalsgaard, Anders & Quilici, M. L., 2023, In: Emerging Infectious Diseases . 29, 1, p. 149-153 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Genomic traits of Aeromonas veronii isolated from slaughtered Danish broilers

    Erickson, Vera Irene, Alfifi, Ahmed Eassa H, Hounmanou, Yaovi Mahuton Gildas, Sana, M. J., Christensen, Jens Peter & Dalsgaard, Anders, 2023, In: Veterinary Microbiology. 283, 109772.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Health based animal and meat safety cooperative communities

    Vågsholm, I., Belluco, S., Bonardi, S., Hansen, F., Elias, T., Roasto, M., Gomes-Neves, E., Antunovic, B., Kautto, A. H., Alban, L. & Blagojevic, B., 2023, In: Food Control. 154, 110016.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    High Genetic Diversity of Carbapenem-Resistant Acinetobacter baumannii Isolates Recovered in Nigerian Hospitals in 2016 to 2020

    Odih, Erkison Ewomazino, Oaikhena, A. O., Underwood, A., Hounmanou, Yaovi Mahuton Gildas, Oduyebo, O. O., Fadeyi, A., Aboderin, A. O., Ogunleye, V. O., Argimón, S., Akpunonu, V. N., Oshun, P. O., Egwuenu, A., Okwor, T. J., Ihekweazu, C., Aanensen, D. M., Dalsgaard, Anders & Okeke, I. N., 2023, In: mSphere. 8, 3, e0009823.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    How problem based teaching in amultidisciplinary continuing educationclassroom can contribute to improvingprofessional skills

    Hounmanou, Yaovi Mahuton Gildas, 2023, Improving University Science Teaching and Learning: Pedagogical Projects 2023. University of Copenhagen, p. 337-346 (Improving University Science Teaching and Learning - Pedagogical Projects; No. 18).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  59. Published

    Influence of vaccination on adverse health outcomes after SARS-CoV-2 infection among individuals with alcohol use disorder: a population-based study

    Askgaard, G., Osler, Merete, Laursen, T. M., Hjorthøj, Carsten, Benros, Michael Eriksen, Ethelberg, Steen, Mølbak, Kåre, Nordentoft, Merete & Nilsson, S. F., 2023, In: Addiction. 118, 8, 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Mapping ways of detecting and handling antimicrobial residues in pigs and pig meat in- and outside Europe

    Alban, L., Antunović, B., Belous, M., Bonardi, S., García-Gimeno, R. M., Jenson, I., Kautto, A. H., Majewski, M., Oorburg, D., Sakaridis, I., Sirbu, A., Vieira-Pinto, M., Vågsholm, I., Bērziņš, A. & Petersen, J. V., 2023, In: Food Control. 153, 10 p., 109899.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Mitigating antimicrobial resistance (AMR) using implementation research: a development funder's approach

    Khurana, M. P., Essack, S., Zoubiane, G., Sreenivasan, N., Cordoba, G. C., Westwood, E., Dalsgaard, A., Mdegela, R. H., Mpundu, M., Scotini, R., Matondo, A. B., Mzula, A., Chanishvili, N., Gogebashvili, D., Beruashvili, M., Tsereteli, M., Sooronbaev, T., Kjærgaard, J., Bloch, J., Isaeva, E. & 12 others, Mainda, G., Muuka, G., Mudenda, N. B., Goma, F. Y., Chu, D., Chanda, D., Chirwa, U., Yamba, K., Kapolowe, K., Fwoloshi, S., Mwenge, L. & Skov, R., 2023, In: JAC-Antimicrobial Resistance. 5, 2, 10 p., 031.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Patterns of testing in the extensive Danish national SARS-CoV-2 test set-up

    Gram, M. A., Steenhard, N., Cohen, A. S., Vangsted, A., Mølbak, Kåre, Jensen, T. G., Hansen, C. H. & Ethelberg, Steen, 2023, In: PLoS ONE. 18, 7, 14 p., e0281972.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Persistent Symptoms and Sequelae After Severe Acute Respiratory Syndrome Coronavirus 2 Infection Not Requiring Hospitalization: Results From Testing Denmark, a Danish Cross-sectional Survey

    van Wijhe, M., Fogh, K., Ethelberg, S., Iversen, K. K., Nielsen, H., Østergaard, L., Andersen, B., Bundgaard, H., Jorgensen, C. S., Scharff, B. F. S. S., Ellermann-Eriksen, S., Johansen, I. S., Fomsgaard, A., Krause, T. G., Wiese, L., Fischer, T. K., Molbak, K., Benfield, T., Folke, F., Lippert, F. & 9 others, Ostrowski, Sisse Rye, Koch, A., Erikstrup, C., Vangsted, A., Sorensen, A. I. V., Ullum, H., Skov, R. L., Simonsen, L. & Nielsen, Susanne Dam, 2023, In: Open Forum Infectious Diseases. 10, 1, 10 p., 679.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Pharmacokinetics and depletion of florfenicol in striped catfish Pangasianodon hypophthalmus after oral administration

    Pham, Q. V., Nguyen, Q. T., Devreese, M., Croubels, S., Dang, T. H. O., Dalsgaard, Anders, Maita, M. & Tran, M. P., 2023, In: Fisheries Science. 89, 3, p. 357-365 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Pilot study of the productivity and Salmonella seroprevalence in pigs administered organic acids

    Roldan-Henao, M., Dalsgaard, Anders, Cardona-Castro, N., Restrepo-Rivera, L., Veloza-Angulo, L. C. & Alban, L., 2023, In: Frontiers in Veterinary Science. 10, 1123137.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Polyether Ionophore Antibiotics Target Drug-Resistant Clinical Isolates, Persister Cells, and Biofilms

    Wollesen, M., Mikkelsen, K., Tvilum, M. S., Vestergaard, M., Wang, M., Meyer, R. L., Ingmer, Hanne, Poulsen, T. B. & Tørring, T., 2023, In: Microbiology Spectrum. 11, 4, 14 p., e0062523.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Post-weaning diarrhea in pigs from a single Danish production herd was not associated with the pre-weaning fecal microbiota composition and diversity

    Rydal, Martin Peter, Gambino, Michela, Castro-Mejia, J. L., Poulsen, Louise Ladefoged, Jørgensen, Claus Bøttcher & Nielsen, Jens Peter, 2023, In: Frontiers in Microbiology. 14, 1108197.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Prevalence and whole genome phylogenetic analysis reveal genetic relatedness between antibiotic resistance Salmonella in hatchlings and older chickens from farms in Nigeria

    Jibril, A. H., Okeke, I. N., Dalsgaard, Anders & Olsen, John Elmerdahl, 2023, In: Poultry Science. 102, 3, 102427.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    Producing Tailocins from Phages Using Osmotic Shock and Benzalkonium Chloride

    Woudstra, Cedric Folkert Julien & Brøndsted, Lone, 2023, In: PHAGE: Therapy, Applications, and Research. 4, 3, p. 136-140 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Rethinking the Inoculum Used in Animal Models of Implant-Associated Osteomyelitis – The Formation and Application of Bacterial Aggregates

    Hartmann, Katrine Top, Nielsen, R. L., Mikkelsen, F. C., Ingmer, Hanne, Kvich, Lasse Andersson, Aalbæk, Bent, Odgaard, Anders, Jensen, Henrik Elvang, Lichtenberg, Mads, Bjarnsholt, Thomas & Jensen, Louise Kruse, 2023, p. 59. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  71. Published

    SWOT analysis of risk factors associated with introduction of African Swine Fever through vehicles returning after export of pigs

    Gao, Y., Nielsen, L. H., Boklund, Anette, de Jong, M. C. M. & Alban, L., 2023, In: Frontiers in Veterinary Science. 9, 1049940.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Users’ perception of the OH-EpiCap evaluation tool based on its application to nine national antimicrobial resistance surveillance systems

    Moura, P., Collineau, L., Sandberg, M., Tomassone, L., De Meneghi, D., Norström, M., Bennani, H., Häsler, B., Colomb-Cotinat, M., Bourély, C., Filippitzi, M. E., Mediouni, S., Boriani, E., Asaduzzaman, M., Caniça, M., Aenishaenslin, C. & Alban, L., 2023, In: Frontiers in Public Health. 11, 1138645.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Whole strains vs MGEs in short and longterm transmission of ESBL genes between healthcare and community settings in Uganda

    Hounmanou, Yaovi Mahuton Gildas, Wanyana, A., Alafi, S., Wabwire-mangen, F., Christensen, Henrik, Olsen, John Elmerdahl & Byarugaba, D. K., 2023, In: Scientific Reports. 13, 10229.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. 2022
  75. Published

    Transmission of SARS-CoV-2 Omicron VOC subvariants BA.1 and BA.2: Evidence from Danish Households

    Lyngse, Frederik Plesner, Kirkeby, Carsten, Denwood, Matt, Christiansen, L. E., Mølbak, Kåre, Møller, C. H., Skov, R. L., Krause, Tyra Grove, Rasmussen, M., Sieber, R. N., Johannesen, T. B., Lillebaek, Troels, Fonager, J., Fomsgaard, A., Møller, F. T., Stegger, M., Overvad, M., Spiess, K. & Mortensen, Laust Hvas, 30 Jan 2022, 2 p.

    Research output: Other contribution › Research

  76. Published

    Assessment of risk to humans related to Salmonella from bile on pig carcasses

    Alban, L., Poulsen, M. K., Petersen, J. V., Lindegaard, L. L., Meinert, L., Koch, A. G. & Møgelmose, V., Jan 2022, In: Food Control. 131, 10 p., 108415.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Salmonella Salamae and S. Waycross isolated from Nile perch in Lake Victoria show limited human pathogenic potential

    Hounmanou, Yaovi Mahuton Gildas, Baniga, Z., García, V. & Dalsgaard, Anders, 2022, In: Scientific Reports. 12, 11 p., 4229.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    A European survey on post-mortem inspection of finishing pigs: Total condemnation criteria to declare meat unfit for human consumption

    Vieira-Pinto, M., Langkabel, N., Santos, S., Alban, L., Laguna, J. G., Blagojevic, B., Meemken, D., Bonardi, S., Antunović, B., Ghidini, S., Maurer, P., Alvseike, O. & Laukkanen-Ninios, R., 2022, In: Research in Veterinary Science. 152, p. 72-82 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    A bottom-up view of antimicrobial resistance transmission in developing countries

    Ikhimiukor, O. O., Odih, Erkison Ewomazino, Donado-Godoy, P. & Okeke, I. N., 2022, In: Nature Microbiology. 7, 6, p. 757-765 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  80. Published

    A porcine model of subcutaneous Staphylococcus aureus infection: a pilot study

    Nielsen, O. L., Mellergaard, M., Frees, Dorte, Larsen, M. N., Skov, Søren, Olsen, Lisbeth Høier & Reimann, Maria Josefine, 2022, In: APMIS - Journal of Pathology, Microbiology and Immunology. 130, 7, p. 359-370

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories

    Fait, A., Seif, Y., Mikkelsen, K., Poudel, S., Wells, J. M., Palsson, B. O. & Ingmer, Hanne, 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 30, e2118262119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Additional post-mortem inspection procedures and laboratory methods as supplements for visual meat inspection of finishing pigs in Europe—Use and variability

    Laukkanen-Ninios, R., Ghidini, S., Gómez Laguna, J., Langkabel, N., Santos, S., Maurer, P., Meemken, D., Alban, L., Alvseike, O. & Vieira-Pinto, M., 2022, In: Journal fur Verbraucherschutz und Lebensmittelsicherheit. 17, p. 363–375

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Adverse SARS-CoV-2-associated outcomes among people experiencing social marginalisation and psychiatric vulnerability: A population-based cohort study among 4,4 million people

    Nilsson, S. F., Laursen, T. M., Osler, Merete, Hjorthøj, Carsten, Benros, Michael Eriksen, Ethelberg, Steen, Mølbak, Kåre & Nordentoft, Merete, 2022, In: The Lancet Regional Health - Europe. 15 p., 100421.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Characterisation of Salmonella enteritidis ST11 and ST1925 Associated with Human Intestinal and Extra-Intestinal Infections in Singapore

    Aung, K. T., Khor, W. C., Ong, K. H., Tan, W. L., Wong, Z. N., Oh, J. Q., Wong, W. K., Tan, B. Z. Y., Maiwald, M., Tee, N. W. S., Barkham, T., Koh, T. H., Dalsgaard, Anders, Chen, S. L., Schlundt, J. & Ng, L. C., 2022, In: International Journal of Environmental Research and Public Health. 19, 9, 5671.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Characterization of Escherichia coli and other bacteria isolated from condemned broilers at a Danish abattoir

    Alfifi, Ahmed Eassa H, Christensen, Jens Peter, Hounmanou, Yaovi Mahuton Gildas, Sandberg, M. & Dalsgaard, Anders, 2022, In: Frontiers in Microbiology. 13, 13 p., 1020586.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Determination of an optimal ELISA cut-off for the diagnosis of Toxoplasma gondii infection in pigs using Bayesian latent class modelling of data from multiple diagnostic tests

    Olsen, Abbey , Nielsen, H. V., Alban, L., Houe, Hans, Jensen, T. B. & Denwood, Matt, 2022, In: Preventive Veterinary Medicine. 201, 105606.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Dietary Risk Assessment Due to the Consumption of Polycyclic Aromatic Hydrocarbon in Two Commonly Consumed Street Vended Foods

    Ankar-Brewoo, G. M., Darko, G., Abaidoo, R. C., Dalsgaard, Anders, Johnson, P. N., Ellis, W. O. & Brimer, L., 2022, In: Polycyclic Aromatic Compounds. 42, 5, p. 2151-2161

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Differences in code terminology and frequency of findings in meat inspection of finishing pigs in seven European countries

    Alban, L., Vieira-Pinto, M., Meemken, D., Maurer, P., Ghidini, S., Santos, S., Laguna, J. G., Laukkanen-Ninios, R., Alvseike, O. & Langkabel, N., 2022, In: Food Control. 132, 108394.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Effect of vaccination on household transmission of SARS-CoV-2 Delta variant of concern

    Lyngse, Frederik Plesner, Mølbak, Kåre, Denwood, Matt, Christiansen, L. E., Møller, C. H., Rasmussen, M., Cohen, A. S., Stegger, M., Fonager, J., Sieber, R. N., Ellegaard, K. M., Nielsen, C. & Kirkeby, Carsten, 2022, In: Nature Communications. 13, 1, 3764.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Estimating the true seroprevalence of Toxoplasma gondii in Danish pigs

    Olsen, Abbey , Sandberg, M., Houe, Hans, Nielsen, H. V., Denwood, Matt & Alban, L. M., 2022, 16th International Symposium of Veterinary Epidemiology and Economics: Connecting Animals, People, and their shared environments - Abstract book. p. 453 1 p. 36

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research › peer-review

  91. Published

    Excess all-cause mortality in the USA and Europe during the COVID-19 pandemic, 2020 and 2021

    Rossen, L. M., Nørgaard, S. K., Sutton, P. D., Krause, Tyra Grove, Ahmad, F. B., Vestergaard, L. S., Mølbak, Kåre, Anderson, R. N. & Nielsen, J., 2022, In: Scientific Reports. 12, 18559.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Fecal Shedding of Multidrug Resistant Escherichia coli Isolates in Dogs Fed with Raw Meat-Based Diets in Brazil

    Ramos, C. P., Kamei, C. Y. I., Viegas, F. M., de Melo Barbieri, J., Cunha, J. L. R., Hounmanou, Yaovi Mahuton Gildas, Coura, F. M., Santana, J. A., Lobato, F. C. F., Bojesen, Anders Miki & Silva, R. O. S., 2022, In: Antibiotics. 11, 4, 534.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Finding New Fundamental Pieces for the Bacterial Cell Division Puzzle

    Frees, Dorte & Ingmer, Hanne, 2022, In: mBio. 13, 4, e0073722.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    From Alpha Diversity to Zzz: Interactions among sleep, the brain, and gut microbiota in the first year of life

    Schoch, S. F., Castro-Mejía, J. L., Krych, Lukasz, Leng, B., Kot, Witold, Kohler, M., Huber, R., Rogler, G., Biedermann, L., Walser, J. C., Nielsen, Dennis Sandris & Kurth, S., 2022, In: Progress in Neurobiology. 209, 11 p., 102208.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Genome Sequences of 16 Escherichia coli Bacteriophages Isolated from Wastewater, Pond Water, Cow Manure, and Bird Feces

    Vitt, Amira Ruslanovna, Ahern, S. J., Gambino, Michela, Sørensen, Martine Camilla Holst & Brøndsted, Lone, 2022, In: Microbiology resource announcements. 11, 10

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

    Munk, P., Brinch, C., Møller, F. D., Petersen, T. N., Hendriksen, R. S., Seyfarth, A. M., Kjeldgaard, J. S., Svendsen, C. A., van Bunnik, B., Berglund, F., Bego, A., Power, P., Rees, C., Lambrinidis, D., Neilson, E. H. J., Gibb, K., Coventry, K., Collignon, P., Cassar, S., Allerberger, F. & 31 others, Begum, A., Hossain, Z. Z., Worrell, C., Vandenberg, O., Pieters, I., Victorien, D. T., Gutierrez, A. D. S., Soria, F., Grujić, V. R., Mazalica, N., Rahube, T. O., Tagliati, C. A., Rodrigues, D., Oliveira, G., de Souza, L. C. R., Ivanov, I., Juste, B. I., Oumar, T., Sopheak, T., Vuthy, Y., Ngandijo, A., Nzouankeu, A., Olivier, Z. A. A. J., Yost, C. K., Hansen, L. T., Jensen, P. E., Parimannan, S., Hounmanou, Yaovi Mahuton Gildas, Thomsen, J., Aarestrup, F. M. & Global Sewage Surveillance Consortium, G. S. S. C., 2022, In: Nature Communications. 13, 16 p., 7251.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Genomic analysis of the zoonotic ST73 lineage containing avian and human extraintestinal pathogenic Escherichia coli (ExPEC)

    Becker Simoes Saidenberg, André, van Vliet, A. H. M., Stegger, M., Johannesen, T. B., Semmler, T., Cunha, M., C. de O. Silveira, A., Kuroki Anzai, E., C.A. Scaletsky, I., Dalsgaard, Anders, La Ragione, R. M. & Knöbl, T., 2022, In: Veterinary Microbiology. 267, 109372.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Genomic and Phenotypic Insights for Toxigenic Clinical Vibrio cholerae O141

    Hounmanou, Yaovi Mahuton Gildas, Sit, B., Fakoya, B., Waldor, M. K. & Dalsgaard, Anders, 2022, In: Emerging Infectious Diseases . 28, 3, p. 617-624 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Household transmission of SARS-CoV-2 Omicron variant of concern subvariants BA.1 and BA.2 in Denmark

    Lyngse, Frederik Plesner, Kirkeby, Carsten, Denwood, Matt, Christiansen, L. E., Mølbak, Kåre, Holten Møller, C., Skov, R. L., Krause, Tyra Grove, Rasmussen, M., Sieber, R., Johannesen, T. B., Lillebaek, Troels, Fonager, J., Fomsgaard, A., Møller, F. T., Stegger, M., Overvad, M., Spiess, K. & Mortensen, Laust Hvas, 2022, In: Nature Communications. 13, 7 p., 5760 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Household transmission of the SARS-CoV-2 Omicron variant in Denmark

    Lyngse, Frederik Plesner, Mortensen, Laust Hvas, Denwood, Matt, Christiansen, L. E., Møller, C. H., Skov, R. L., Spiess, K., Fomsgaard, A., Lassaunière, R., Rasmussen, M., Stegger, M., Nielsen, C., Sieber, R. N., Cohen, A. S., Møller, F. T., Overvad, M., Mølbak, Kåre, Krause, Tyra Grove & Kirkeby, Carsten, 2022, In: Nature Communications. 13, 5573.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    Impact of the Gram-Negative-Selective Inhibitor MAC13243 on In Vitro Simulated Gut Microbiota

    Svanberg Frisinger, Frida, Pirolo, Mattia, Ng, D. Y. K., Mao, Xiaotian, Nielsen, Dennis Sandris & Guardabassi, Luca, 2022, In: Pharmaceuticals. 15, 6, 731.

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    Intrinsic tet(L) sub-class in Bacillus velezensis and Bacillus amyloliquefaciens is associated with a reduced susceptibility toward tetracycline

    Nøhr-Meldgaard, K., Struve, C., Ingmer, Hanne & Agersø, Marie Yvonne Feraren, 2022, In: Frontiers in Microbiology. 13, 966016.

    Research output: Contribution to journal › Journal article › Research › peer-review

  103. Published

    Investigating ways of detecting and handling findings indicating prior septicaemia in bovines

    Petersen, J. V., Abildgaard, K. S., Poulsen, M. K. & Alban, L., 2022, In: Food Control. 137, 108901.

    Research output: Contribution to journal › Journal article › Research › peer-review

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