Food Safety and Zoonoses

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  1. 2024
  2. Published

    Comparison of morbidity and mortality after bloodstream infection with vancomycin-resistant versus -susceptible Enterococcus faecium: a nationwide cohort study in Denmark, 2010–2019

    Bager, P., Kähler, J., Andersson, M., Holzknecht, Barbara Juliane, Kjær Hansen, S. G., Schønning, Kristian, Nielsen, K. L., Koch, K., Pinholt, M., Voldstedlund, M., Larsen, A. R., Kristensen, B., Mølbak, Kåre, Sönksen, U. W., Skovgaard, S., Skov, R. & Hammerum, A. M., 2024, In: Emerging Microbes and Infections. 13, 1, 13 p., 2309969.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Porcine respiratory coronavirus genome sequences; comparisons and relationships to transmissible gastroenteritis viruses

    Bedsted, Amalie Ehlers, Rasmussen, T. B., Martinenghi, Laura Daniela, Bøtner, A., Nauwynck, H. J. & Belsham, Graham John, 9 Apr 2024, In: Virology. 595

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Risk-based meat inspection and integrated meat safety assurance

    Blagojevic, B. & Alban, L., 2024, In: Food Control. 157, 3 p., 110183.

    Research output: Contribution to journal › Editorial › Research

  5. Published

    Flagellotropic phages: common yet diverse host interaction strategies

    Gambino, Michela & Sørensen, Martine Camilla Holst, 2024, In: Current Opinion in Microbiology. 78, 7 p., 102451.

    Research output: Contribution to journal › Review › Research › peer-review

  6. Published

    The ClpX chaperone and a hypermorphic FtsA variant with impaired self-interaction are mutually compensatory for coordinating Staphylococcus aureus cell division

    Henriksen, C., Bæk, K. T., Wacnik, K., Gallay, C., Veening, J. W., Foster, S. J. & Frees, Dorte, 2024, In: Molecular Microbiology. 121, 1, p. 98-115

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Veterinary bacteriology in Denmark from the 1880s to 2022

    Leisner, Jørgen & Larsen, J. L., 2024, In: APMIS. 132, 1, p. 31-42

    Research output: Contribution to journal › Review › Research › peer-review

  8. Published

    Effect of dietary tall oil fatty acids and hydrolysed yeast in SNP2-positive and SNP2-negative piglets challenged with F4 enterotoxigenic Escherichia coli

    Middelkoop, A., Kettunen, H., Guan, X., Vuorenmaa, J., Tichelaar, R., Gambino, Michela, Rydal, Martin Peter & Molist, F., 2024, In: Scientific Reports. 14, 12 p., 2060.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Lack of correlation between growth, stress, and virulence phenotypes in strains of Salmonella enterica serovar Enteritidis, S. Typhimurium DT104, S. 4,12, b:- and S. Liverpool

    Olsen, John Elmerdahl, Frees, Dorte, Kyvsgaard, N. C. & Barco, L., 2024, In: Letters in Applied Microbiology. 77, 2, 9 p., ovae015.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Isolation and characterization of novel plasmid-dependent phages infecting bacteria carrying diverse conjugative plasmids

    Parra, B., Cockx, B., Lutz, Veronika Theresa, Brøndsted, Lone, Smets, B. F. & Dechesne, A., 2024, In: Microbiology Spectrum. 12, 1, p. e0253723

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Agtrevirus phage AV101 recognizes four different O-antigens infecting diverse E. coli

    Sørensen, Anders Nørgaard, Kalmár, D., Lutz, Veronika Theresa, Klein De Sousa, Victor, Taylor, Nicholas M I, Sørensen, Martine Camilla Holst & Brøndsted, Lone, 2024, In: microLife. 5, 12 p., uqad047.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Draft genome sequences of three Carnobacterium maltaromaticum isolates from two low pH bogs in Denmark

    Tang, Taya & Leisner, Jørgen, 2024, In: Microbiology resource announcements. 13, 1, 4 p., e00969-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    CI:Mor interactions in the lysogeny switches of Lactococcus lactis TP901-1 and Staphylococcus aureus φ13 bacteriophages

    Varming, A. K., Huang, Zhiyu, Hamad, G. M., Rasmussen, K. K., Ingmer, Hanne, Kilstrup, M. & Lo Leggio, Leila, 2024, In: Microbiome Research Reports. 3, 2, 16 p., 15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Diverse bacteriophages for biocontrol of ESBL- and AmpC-β-lactamase-producing E. coli

    Vitt, Amira Ruslanovna, Sørensen, Anders Nørgaard, Bojer, Martin Saxtorph, Bortolaia, V., Sørensen, Martine Camilla Holst & Brøndsted, Lone, 2024, In: iScience. 27, 2, 21 p., 108826.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Staphylococcus aureus mutants resistant to the feed-additive monensin show increased virulence and altered purine metabolism

    Warsi, O. M., Upterworth, L. M., Breidenstein, A., Lustig, U., Mikkelsen, K., Nagy, T., Szatmari, D., Ingmer, Hanne & Andersson, D. I., 2024, In: mBio. 15, 2, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. E-pub ahead of print

    Strategies for developing phages into novel antimicrobial tailocins

    Woudstra, Cedric Folkert Julien, Sørensen, Anders Nørgaard, Sørensen, Martine Camilla Holst & Brøndsted, Lone, 2024, (E-pub ahead of print) In: Trends in Microbiology.

    Research output: Contribution to journal › Review › Research › peer-review

  17. 2023
  18. Published

    Clonal relatedness of coagulase-positive staphylococci among healthy dogs and dog-owners in Spain. Detection of multidrug-resistant-MSSA-CC398 and novel linezolid-resistant-MRSA-CC5

    Abdullahi, I. N., Lozano, C., Zarazaga, M., Becker Simoes Saidenberg, André, Stegger, M. & Torres, C., 2023, In: Frontiers in Microbiology. 14, 1121564.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Comparative review of the nasal carriage and genetic characteristics of Staphylococcus aureus in healthy livestock: Insight into zoonotic and anthroponotic clones

    Abdullahi, I. N., Lozano, C., Becker Simoes Saidenberg, André, Latorre-Fernández, J., Zarazaga, M. & Torres, C., 2023, In: Infection, Genetics and Evolution. 109, 105408.

    Research output: Contribution to journal › Review › Research › peer-review

  20. Published

    Evaluation of the value of using bovine kidneys as an additional matrix in a bacteriological examination of carcass fitness for human consumption

    Abildgaard, K., Petersen, J. V., Kiel Poulsen, M. & Alban, L., 2023, In: Food Control. 153, 109928.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Mapping ways of detecting and handling antimicrobial residues in pigs and pig meat in- and outside Europe

    Alban, L., Antunović, B., Belous, M., Bonardi, S., García-Gimeno, R. M., Jenson, I., Kautto, A. H., Majewski, M., Oorburg, D., Sakaridis, I., Sirbu, A., Vieira-Pinto, M., Vågsholm, I., Bērziņš, A. & Petersen, J. V., 2023, In: Food Control. 153, 10 p., 109899.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Accidental delivery of pigs for slaughter prior to end of withdrawal period for antimicrobial treatment - Ways of handling

    Alban, L., Antunovic, B., Belous, M., Bērziņš, A., Bonardi, S., García-Gimeno, R. M., Jenson, I., Kautto, A. H., Majewski, M., Oorburg, D., Sakaridis, I., Sirbu, A., Vieira-Pinto, M., Vågsholm, I. & Petersen, J. V., 2023, In: Food Control. 154, 8 p., 110000.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Capturing systematically users' experience of evaluation tools for integrated AMU and AMR surveillance

    Alban, L., Bordier, M., Häsler, B., Collineau, L., Tomassone, L., Bennani, H., Aenishaenslin, C., Norström, M., Aragrande, M., Filippitzi, M. E., Moura, P. & Sandberg, M., 2023, In: Frontiers in Veterinary Science. 10, 1107122.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Influence of vaccination on adverse health outcomes after SARS-CoV-2 infection among individuals with alcohol use disorder: a population-based study

    Askgaard, G., Osler, Merete, Laursen, T. M., Hjorthøj, Carsten, Benros, Michael Eriksen, Ethelberg, Steen, Mølbak, Kåre, Nordentoft, Merete & Nilsson, S. F., 2023, In: Addiction. 118, 8, 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Presencia de Salmonella spp en plantas de beneficio porcícolas en Colombia: revisión sistemática y metaanálisis

    Carrascal-Camacho, A. K., Barrientos-Anzol, I., Sampedro, F., Rojas, F., Pérez, M., Dalsgaard, Anders, Pulido-Villamarín, A. A. & Camacho-Carrillo, M. A., 2023, In: Revista de Investigaciones Veterinarias del Peru. 34, 6, 10 p., e25111.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Bacterial species diversity of traditionally ripened sheep legs from the Faroe Islands (skerpikjøt)

    Charmpi, C., Thamsborg, K. K. M., Mikalsen, S. O., Magnussen, E., Sosa Fajardo, A., Van der Veken, D., Leisner, Jørgen & Leroy, F., 2023, In: International Journal of Food Microbiology. 386, 110023.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Changes in fatty acids during storage of artisanal-processed freshwater sardines (Rastrineobola argentea)

    Chaula, D., Jacobsen, C., Laswai, H. S., Chove, B. E., Dalsgaard, Anders, Mdegela, R. & Hyldig, G., 2023, In: Food Science and Nutrition. 11, 6, p. 3040-3047

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Comparative genomic analysis of Aeromonas dhakensis and Aeromonas hydrophila from diseased striped catfish fingerlings cultured in Vietnam

    Erickson, Vera Irene, Khoi, L. M., Hounmanou, Yaovi Mahuton Gildas, Dung, T. T., Phu, T. M. & Dalsgaard, Anders, 2023, In: Frontiers in Microbiology. 14, 14 p., 1254781.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Genomic traits of Aeromonas veronii isolated from slaughtered Danish broilers

    Erickson, Vera Irene, Alfifi, Ahmed Eassa H, Hounmanou, Yaovi Mahuton Gildas, Sana, M. J., Christensen, Jens Peter & Dalsgaard, Anders, 2023, In: Veterinary Microbiology. 283, 109772.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Association between SARS-CoV-2 infection and self-harm: Danish nationwide register-based cohort study

    Erlangsen, A., Qin, P., Madsen, Trine, Hawton, K., Osler, Merete, Hjorthøj, Carsten, Benros, Michael Eriksen, Ethelberg, Steen, Mølbak, Kåre, Laursen, T. M., Nordentoft, Merete & Nilsson, S. F., 2023, In: The British journal of psychiatry : the journal of mental science. 222, 4, p. 167–174 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Evolutionary history of Staphylococcus aureus influences antibiotic resistance evolution

    Fait, A., Andersson, D. I. & Ingmer, Hanne, 2023, In: Current Biology. 33, 16, p. 3389-3397.e5

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    A Cross-Sectional Study of SARS-CoV-2 Antibodies and Risk Factors for Seropositivity in Staff in Day Care Facilities and Preschools in Denmark

    Fogh, K., Eriksen, A. R. R., Larsen, T. G., Hasselbalch, R. B., Bundgaard, H., Scharff, B., Nielsen, S. D., Jørgensen, C. S., Erikstrup, C., Østergaard, L., Ellermann-Eriksen, S., Andersen, B., Nielsen, H., Johansen, I. S., Wiese, L., Hindhede, L., Mikkelsen, S., Sækmose, S. G., Aagaard, B., Holm, D. K. & 16 others, Harritshøj, Lene Holm, Simonsen, L., Fischer, Thea Kølsen, Folke, Fredrik, Lippert, F., Ostrowski, Sisse Rye, Benfield, Thomas, Mølbak, Kåre, Ethelberg, Steen, Koch, A., Vangsted, A., Krause, Tyra Grove, Fomsgaard, A., Ullum, H., Skov, R. & Iversen, Kasper, 2023, In: Microbiology Spectrum. 11, 1, 11 p., e0417422.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Estimating the impact of low temperature on African swine fever virus transmission through contaminated environments

    Gao, Y., Boklund, Anette, Nielsen, L. H., Alban, L. & de Jong, M. C. M., 2023, In: Preventive Veterinary Medicine. 219, 105991.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    SWOT analysis of risk factors associated with introduction of African Swine Fever through vehicles returning after export of pigs

    Gao, Y., Nielsen, L. H., Boklund, Anette, de Jong, M. C. M. & Alban, L., 2023, In: Frontiers in Veterinary Science. 9, 1049940.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    ECOPHAGE: Combating Antimicrobial Resistance Using Bacteriophages for Eco-Sustainable Agriculture and Food Systems

    García, P., Tabla, R., Anany, H., Bastias, R., Brøndsted, Lone, Casado, S., Cifuentes, P., Deaton, J., Denes, T. G., Islam, M. A., Lavigne, R., Moreno-Switt, A. I., Nakayama, N., Muñoz Madero, C., Sulakvelidze, A., Svircev, A. M., Wagemans, J., Biosca, E. G. & Rivera, D., 2023, In: Viruses. 15, 11, 18 p., 2224.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Förster Resonance Energy Transfer Assay for Investigating the Reactivity of Thioesters in Biochemistry and Native Chemical Ligation

    Gless, B. H., Schmied, S. H., Bejder, Benjamin Svejdal & Olsen, Christian Adam, 2023, In: JACS Au. 3, 5, p. 1443–1451

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Patterns of testing in the extensive Danish national SARS-CoV-2 test set-up

    Gram, M. A., Steenhard, N., Cohen, A. S., Vangsted, A., Mølbak, Kåre, Jensen, T. G., Hansen, C. H. & Ethelberg, Steen, 2023, In: PLoS ONE. 18, 7, 14 p., e0281972.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Rethinking the Inoculum Used in Animal Models of Implant-Associated Osteomyelitis – The Formation and Application of Bacterial Aggregates

    Hartmann, Katrine Top, Nielsen, R. L., Mikkelsen, F. C., Ingmer, Hanne, Kvich, Lasse Andersson, Aalbæk, Bent, Odgaard, Anders, Jensen, Henrik Elvang, Lichtenberg, Mads, Bjarnsholt, Thomas & Jensen, Louise Kruse, 2023, p. 59. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  39. Published

    Genomic Microevolution of Vibrio cholerae O1, Lake Tanganyika Basin, Africa

    Hounmanou, Yaovi Mahuton Gildas, Njamkepo, E., Rauzier, J., Gallandat, K., Jeandron, A., Kamwiziku, G., Porten, K., Luquero, F., Abedi, A. A., Rumedeka, B. B., Miwanda, B., Michael, M., Okitayemba, P. W., Saidi, J. M., Piarroux, R., Weill, F. X., Dalsgaard, Anders & Quilici, M. L., 2023, In: Emerging Infectious Diseases . 29, 1, p. 149-153 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Correlation of High Seawater Temperature with Vibrio and Shewanella Infections, Denmark, 2010-2018

    Hounmanou, Yaovi Mahuton Gildas, Engberg, J., Bjerre, K. D., Holt, H. M., Olesen, B., Voldstedlund, M., Dalsgaard, Anders & Ethelberg, Steen, 2023, In: Emerging Infectious Diseases. 29, 3, p. 605-608 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    How problem based teaching in amultidisciplinary continuing educationclassroom can contribute to improvingprofessional skills

    Hounmanou, Yaovi Mahuton Gildas, 2023, Improving University Science Teaching and Learning: Pedagogical Projects 2023. University of Copenhagen, p. 337-346 (Improving University Science Teaching and Learning - Pedagogical Projects; No. 18).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  42. Published

    Whole strains vs MGEs in short and longterm transmission of ESBL genes between healthcare and community settings in Uganda

    Hounmanou, Yaovi Mahuton Gildas, Wanyana, A., Alafi, S., Wabwire-mangen, F., Christensen, Henrik, Olsen, John Elmerdahl & Byarugaba, D. K., 2023, In: Scientific Reports. 13, 10229.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Prevalence and whole genome phylogenetic analysis reveal genetic relatedness between antibiotic resistance Salmonella in hatchlings and older chickens from farms in Nigeria

    Jibril, A. H., Okeke, I. N., Dalsgaard, Anders & Olsen, John Elmerdahl, 2023, In: Poultry Science. 102, 3, 102427.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Assessment of human exposure risk related to contamination of Danish sow carcasses with bile containing Salmonella

    Just, M. S., Skive, Bolette, Ingmer, Hanne, Møgelmose, V., Lindegaaard, L. L. & Alban, L., 2023, In: Preventive Veterinary Medicine. 217, 105958.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Mitigating antimicrobial resistance (AMR) using implementation research: a development funder's approach

    Khurana, M. P., Essack, S., Zoubiane, G., Sreenivasan, N., Cordoba, G. C., Westwood, E., Dalsgaard, A., Mdegela, R. H., Mpundu, M., Scotini, R., Matondo, A. B., Mzula, A., Chanishvili, N., Gogebashvili, D., Beruashvili, M., Tsereteli, M., Sooronbaev, T., Kjærgaard, J., Bloch, J., Isaeva, E. & 12 others, Mainda, G., Muuka, G., Mudenda, N. B., Goma, F. Y., Chu, D., Chanda, D., Chirwa, U., Yamba, K., Kapolowe, K., Fwoloshi, S., Mwenge, L. & Skov, R., 2023, In: JAC-Antimicrobial Resistance. 5, 2, 10 p., 031.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    CRISPR-Cas9 Shaped Viral Metagenomes Associated with Bacillus subtilis

    Kohm, K., Lutz, Veronika Theresa, Friedrich, I. & Hertel, R., 2023, Metagenomics: Methods and Protocols. Streit, W. R. & Daniel, R. (eds.). Humana Press, p. 205-212 8 p. (Methods in Molecular Biology, Vol. 2555).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  47. Published

    Bacteriological examination in place in five European countries to assess carcass fitness for consumption during meat inspection

    Laukkanen-Ninios, R., Langkabel, N., Ghidini, S., Pikkemaat, M., Biesta-Peters, E. G., van der Ark, K. & Alban, L., 2023, In: Food Control. 153, 109946.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Fluoroquinolone resistance does not facilitate phage Φ13 integration or excision in Staphylococcus aureus

    Leinweber, H., Sieber, R. N., Bojer, Martin Saxtorph, Larsen, J. & Ingmer, Hanne, 2023, In: Access microbiology. 5, 6, 19 p., 000583.v4.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Clinical Staphylococcus aureus inhibits human T-cell activity through interaction with the PD-1 receptor

    Mellergaard, M., Skovbakke, S. L., Jepsen, S. D., Panagiotopoulou, N., Hansen, A. B. R., Tian, W., Lund, A., Høgh, R. I., Møller, S. H., Guérillot, R., Hayes, A. S., Erikstrup, L. T., Andresen, L., Peleg, A. Y., Larsen, A. R., Stinear, T. P., Handberg, A., Erikstrup, C., Howden, B. P., Goletz, S. & 2 others, Frees, Dorte & Skov, Søren, 2023, In: mBio. 14, 5, 21 p., e01349-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Clostridium botulinum type C, D, C/D, and D/C: An update

    Meurens, F., Carlin, F., Federighi, M., Filippitzi, M. E., Fournier, M., Fravalo, P., Ganière, J. P., Grisot, L., Guillier, L., Hilaire, D., Kooh, P., Le Bouquin-Leneveu, S., Le Maréchal, C., Mazuet, C., Morvan, H., Petit, K., Vaillancourt, J. P. & Woudstra, Cedric Folkert Julien, 2023, In: Frontiers in Microbiology. 13, 1099184.

    Research output: Contribution to journal › Review › Research › peer-review

  51. Published

    An Endogenous Staphylococcus aureus CRISPR-Cas System Limits Phage Proliferation and Is Efficiently Excised from the Genome as Part of the SCCmec Cassette

    Mikkelsen, K., Bowring, Janine Zara, Ng, Y. K., Svanberg Frisinger, Frida, Maglegaard, J. K., Li, Q., Sieber, R. N., Petersen, A., Andersen, P. S., Rostøl, J. T., Høyland-Kroghsbo, Nina Molin & Ingmer, Hanne, 2023, In: Microbiology Spectrum. 11, 4, e01277-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Characterisation of antimicrobial usage in Danish pigs in 2020

    Moura, P., Sandberg, M., Høg, B. B., Niza-Ribeiro, J., Nielsen, E. O. & Alban, L., 2023, In: Frontiers in Veterinary Science. 10, 1155811.

    Research output: Contribution to journal › Journal article › Research › peer-review

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