- 2024
- Published
Comparison of morbidity and mortality after bloodstream infection with vancomycin-resistant versus -susceptible Enterococcus faecium: a nationwide cohort study in Denmark, 2010–2019
Bager, P., Kähler, J., Andersson, M., Holzknecht, Barbara Juliane, Kjær Hansen, S. G., Schønning, Kristian, Nielsen, K. L., Koch, K., Pinholt, M., Voldstedlund, M., Larsen, A. R., Kristensen, B., Mølbak, Kåre, Sönksen, U. W., Skovgaard, S., Skov, R. & Hammerum, A. M., 2024, In: Emerging Microbes and Infections. 13, 1, 13 p., 2309969.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Porcine respiratory coronavirus genome sequences; comparisons and relationships to transmissible gastroenteritis viruses
Bedsted, Amalie Ehlers, Rasmussen, T. B., Martinenghi, Laura Daniela, Bøtner, A., Nauwynck, H. J. & Belsham, Graham John, 9 Apr 2024, In: Virology. 595Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Risk-based meat inspection and integrated meat safety assurance
Blagojevic, B. & Alban, L., 2024, In: Food Control. 157, 3 p., 110183.Research output: Contribution to journal › Editorial › Research
- Published
Flagellotropic phages: common yet diverse host interaction strategies
Gambino, Michela & Sørensen, Martine Camilla Holst, 2024, In: Current Opinion in Microbiology. 78, 7 p., 102451.Research output: Contribution to journal › Review › Research › peer-review
- Published
The ClpX chaperone and a hypermorphic FtsA variant with impaired self-interaction are mutually compensatory for coordinating Staphylococcus aureus cell division
Henriksen, C., Bæk, K. T., Wacnik, K., Gallay, C., Veening, J. W., Foster, S. J. & Frees, Dorte, 2024, In: Molecular Microbiology. 121, 1, p. 98-115Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Veterinary bacteriology in Denmark from the 1880s to 2022
Leisner, Jørgen & Larsen, J. L., 2024, In: APMIS. 132, 1, p. 31-42Research output: Contribution to journal › Review › Research › peer-review
- Published
Spontaneous fermentation mitigates the frequency of genes encoding antimicrobial resistance spreading from the phyllosphere reservoir to the diet
Luo, X., Hounmanou, Yaovi Mahuton Gildas, Ndayisenga, F. & Yu, Z., 2024, In: Science of the Total Environment. 931, 15 p., 172712.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effect of dietary tall oil fatty acids and hydrolysed yeast in SNP2-positive and SNP2-negative piglets challenged with F4 enterotoxigenic Escherichia coli
Middelkoop, A., Kettunen, H., Guan, X., Vuorenmaa, J., Tichelaar, R., Gambino, Michela, Rydal, Martin Peter & Molist, F., 2024, In: Scientific Reports. 14, 12 p., 2060.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Lack of correlation between growth, stress, and virulence phenotypes in strains of Salmonella enterica serovar Enteritidis, S. Typhimurium DT104, S. 4,12, b:- and S. Liverpool
Olsen, John Elmerdahl, Frees, Dorte, Kyvsgaard, N. C. & Barco, L., 2024, In: Letters in Applied Microbiology. 77, 2, 9 p., ovae015.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A hybrid receptor binding protein enables phage F341 infection of Campylobacter by binding to flagella and lipooligosaccharides
Ostenfeld, L. J., Sørensen, Anders Nørgaard, Neve, H., Vitt, Amira Ruslanovna, Klumpp, J. & Sørensen, Martine Camilla Holst, 2024, In: Frontiers in Microbiology. 15, 14 p., 1358909.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Isolation and characterization of novel plasmid-dependent phages infecting bacteria carrying diverse conjugative plasmids
Parra, B., Cockx, B., Lutz, Veronika Theresa, Brøndsted, Lone, Smets, B. F. & Dechesne, A., 2024, In: Microbiology Spectrum. 12, 1, p. e0253723Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nanopore sequencing for identification and characterization of antimicrobial-resistant Escherichia coli and Salmonella spp. from tilapia and shrimp sold at wet markets in Dhaka, Bangladesh
Rheman, S., Hossain, S., Sarker, M. S., Akter, F., Khor, L., Gan, H. M., Powell, A., Card, R. M., Hounmanou, Yaovi Mahuton Gildas, Dalsgaard, Anders, Mohan, C. V., Bupasha, Z. B., Samad, M. A., Verner-Jeffreys, D. W. & Delamare-Deboutteville, J., 2024, In: Frontiers in Microbiology. 15, 11 p., 1329620.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Agtrevirus phage AV101 recognizes four different O-antigens infecting diverse E. coli
Sørensen, Anders Nørgaard, Kalmár, D., Lutz, Veronika Theresa, Klein De Sousa, Victor, Taylor, Nicholas M I, Sørensen, Martine Camilla Holst & Brøndsted, Lone, 2024, In: microLife. 5, 12 p., uqad047.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genome sequences of three Carnobacterium maltaromaticum isolates from two low pH bogs in Denmark
Tang, Taya & Leisner, Jørgen, 2024, In: Microbiology resource announcements. 13, 1, 4 p., e00969-23.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CI:Mor interactions in the lysogeny switches of Lactococcus lactis TP901-1 and Staphylococcus aureus φ13 bacteriophages
Varming, A. K., Huang, Zhiyu, Hamad, G. M., Rasmussen, K. K., Ingmer, Hanne, Kilstrup, M. & Lo Leggio, Leila, 2024, In: Microbiome Research Reports. 3, 2, 16 p., 15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diverse bacteriophages for biocontrol of ESBL- and AmpC-β-lactamase-producing E. coli
Vitt, Amira Ruslanovna, Sørensen, Anders Nørgaard, Bojer, Martin Saxtorph, Bortolaia, V., Sørensen, Martine Camilla Holst & Brøndsted, Lone, 2024, In: iScience. 27, 2, 21 p., 108826.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Staphylococcus aureus mutants resistant to the feed-additive monensin show increased virulence and altered purine metabolism
Warsi, O. M., Upterworth, L. M., Breidenstein, A., Lustig, U., Mikkelsen, K., Nagy, T., Szatmari, D., Ingmer, Hanne & Andersson, D. I., 2024, In: mBio. 15, 2, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Strategies for developing phages into novel antimicrobial tailocins
Woudstra, Cedric Folkert Julien, Sørensen, Anders Nørgaard, Sørensen, Martine Camilla Holst & Brøndsted, Lone, 2024, (E-pub ahead of print) In: Trends in Microbiology.Research output: Contribution to journal › Review › Research › peer-review
- 2023
- Published
Clonal relatedness of coagulase-positive staphylococci among healthy dogs and dog-owners in Spain. Detection of multidrug-resistant-MSSA-CC398 and novel linezolid-resistant-MRSA-CC5
Abdullahi, I. N., Lozano, C., Zarazaga, M., Becker Simoes Saidenberg, André, Stegger, M. & Torres, C., 2023, In: Frontiers in Microbiology. 14, 1121564.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative review of the nasal carriage and genetic characteristics of Staphylococcus aureus in healthy livestock: Insight into zoonotic and anthroponotic clones
Abdullahi, I. N., Lozano, C., Becker Simoes Saidenberg, André, Latorre-Fernández, J., Zarazaga, M. & Torres, C., 2023, In: Infection, Genetics and Evolution. 109, 105408.Research output: Contribution to journal › Review › Research › peer-review
- Published
Evaluation of the value of using bovine kidneys as an additional matrix in a bacteriological examination of carcass fitness for human consumption
Abildgaard, K., Petersen, J. V., Kiel Poulsen, M. & Alban, L., 2023, In: Food Control. 153, 109928.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mapping ways of detecting and handling antimicrobial residues in pigs and pig meat in- and outside Europe
Alban, L., Antunović, B., Belous, M., Bonardi, S., García-Gimeno, R. M., Jenson, I., Kautto, A. H., Majewski, M., Oorburg, D., Sakaridis, I., Sirbu, A., Vieira-Pinto, M., Vågsholm, I., Bērziņš, A. & Petersen, J. V., 2023, In: Food Control. 153, 10 p., 109899.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Accidental delivery of pigs for slaughter prior to end of withdrawal period for antimicrobial treatment - Ways of handling
Alban, L., Antunovic, B., Belous, M., Bērziņš, A., Bonardi, S., García-Gimeno, R. M., Jenson, I., Kautto, A. H., Majewski, M., Oorburg, D., Sakaridis, I., Sirbu, A., Vieira-Pinto, M., Vågsholm, I. & Petersen, J. V., 2023, In: Food Control. 154, 8 p., 110000.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Capturing systematically users' experience of evaluation tools for integrated AMU and AMR surveillance
Alban, L., Bordier, M., Häsler, B., Collineau, L., Tomassone, L., Bennani, H., Aenishaenslin, C., Norström, M., Aragrande, M., Filippitzi, M. E., Moura, P. & Sandberg, M., 2023, In: Frontiers in Veterinary Science. 10, 1107122.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Influence of vaccination on adverse health outcomes after SARS-CoV-2 infection among individuals with alcohol use disorder: a population-based study
Askgaard, G., Osler, Merete, Laursen, T. M., Hjorthøj, Carsten, Benros, Michael Eriksen, Ethelberg, Steen, Mølbak, Kåre, Nordentoft, Merete & Nilsson, S. F., 2023, In: Addiction. 118, 8, 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Presencia de Salmonella spp en plantas de beneficio porcícolas en Colombia: revisión sistemática y metaanálisis
Carrascal-Camacho, A. K., Barrientos-Anzol, I., Sampedro, F., Rojas, F., Pérez, M., Dalsgaard, Anders, Pulido-Villamarín, A. A. & Camacho-Carrillo, M. A., 2023, In: Revista de Investigaciones Veterinarias del Peru. 34, 6, 10 p., e25111.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial species diversity of traditionally ripened sheep legs from the Faroe Islands (skerpikjøt)
Charmpi, C., Thamsborg, K. K. M., Mikalsen, S. O., Magnussen, E., Sosa Fajardo, A., Van der Veken, D., Leisner, Jørgen & Leroy, F., 2023, In: International Journal of Food Microbiology. 386, 110023.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Changes in fatty acids during storage of artisanal-processed freshwater sardines (Rastrineobola argentea)
Chaula, D., Jacobsen, C., Laswai, H. S., Chove, B. E., Dalsgaard, Anders, Mdegela, R. & Hyldig, G., 2023, In: Food Science and Nutrition. 11, 6, p. 3040-3047Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative genomic analysis of Aeromonas dhakensis and Aeromonas hydrophila from diseased striped catfish fingerlings cultured in Vietnam
Erickson, Vera Irene, Khoi, L. M., Hounmanou, Yaovi Mahuton Gildas, Dung, T. T., Phu, T. M. & Dalsgaard, Anders, 2023, In: Frontiers in Microbiology. 14, 14 p., 1254781.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic traits of Aeromonas veronii isolated from slaughtered Danish broilers
Erickson, Vera Irene, Alfifi, Ahmed Eassa H, Hounmanou, Yaovi Mahuton Gildas, Sana, M. J., Christensen, Jens Peter & Dalsgaard, Anders, 2023, In: Veterinary Microbiology. 283, 109772.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Association between SARS-CoV-2 infection and self-harm: Danish nationwide register-based cohort study
Erlangsen, A., Qin, P., Madsen, Trine, Hawton, K., Osler, Merete, Hjorthøj, Carsten, Benros, Michael Eriksen, Ethelberg, Steen, Mølbak, Kåre, Laursen, T. M., Nordentoft, Merete & Nilsson, S. F., 2023, In: The British journal of psychiatry : the journal of mental science. 222, 4, p. 167–174 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary history of Staphylococcus aureus influences antibiotic resistance evolution
Fait, A., Andersson, D. I. & Ingmer, Hanne, 2023, In: Current Biology. 33, 16, p. 3389-3397.e5Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Cross-Sectional Study of SARS-CoV-2 Antibodies and Risk Factors for Seropositivity in Staff in Day Care Facilities and Preschools in Denmark
Fogh, K., Eriksen, A. R. R., Larsen, T. G., Hasselbalch, R. B., Bundgaard, H., Scharff, B., Nielsen, S. D., Jørgensen, C. S., Erikstrup, C., Østergaard, L., Ellermann-Eriksen, S., Andersen, B., Nielsen, H., Johansen, I. S., Wiese, L., Hindhede, L., Mikkelsen, S., Sækmose, S. G., Aagaard, B., Holm, D. K. & 16 others, , 2023, In: Microbiology Spectrum. 11, 1, 11 p., e0417422.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating the impact of low temperature on African swine fever virus transmission through contaminated environments
Gao, Y., Boklund, Anette, Nielsen, L. H., Alban, L. & de Jong, M. C. M., 2023, In: Preventive Veterinary Medicine. 219, 105991.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
SWOT analysis of risk factors associated with introduction of African Swine Fever through vehicles returning after export of pigs
Gao, Y., Nielsen, L. H., Boklund, Anette, de Jong, M. C. M. & Alban, L., 2023, In: Frontiers in Veterinary Science. 9, 1049940.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ECOPHAGE: Combating Antimicrobial Resistance Using Bacteriophages for Eco-Sustainable Agriculture and Food Systems
García, P., Tabla, R., Anany, H., Bastias, R., Brøndsted, Lone, Casado, S., Cifuentes, P., Deaton, J., Denes, T. G., Islam, M. A., Lavigne, R., Moreno-Switt, A. I., Nakayama, N., Muñoz Madero, C., Sulakvelidze, A., Svircev, A. M., Wagemans, J., Biosca, E. G. & Rivera, D., 2023, In: Viruses. 15, 11, 18 p., 2224.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Förster Resonance Energy Transfer Assay for Investigating the Reactivity of Thioesters in Biochemistry and Native Chemical Ligation
Gless, B. H., Schmied, S. H., Bejder, Benjamin Svejdal & Olsen, Christian Adam, 2023, In: JACS Au. 3, 5, p. 1443–1451Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Patterns of testing in the extensive Danish national SARS-CoV-2 test set-up
Gram, M. A., Steenhard, N., Cohen, A. S., Vangsted, A., Mølbak, Kåre, Jensen, T. G., Hansen, C. H. & Ethelberg, Steen, 2023, In: PLoS ONE. 18, 7, 14 p., e0281972.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rethinking the Inoculum Used in Animal Models of Implant-Associated Osteomyelitis – The Formation and Application of Bacterial Aggregates
Hartmann, Katrine Top, Nielsen, R. L., Mikkelsen, F. C., Ingmer, Hanne, Kvich, Lasse Andersson, Aalbæk, Bent, Odgaard, Anders, Jensen, Henrik Elvang, Lichtenberg, Mads, Bjarnsholt, Thomas & Jensen, Louise Kruse, 2023, p. 59. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Genomic Microevolution of Vibrio cholerae O1, Lake Tanganyika Basin, Africa
Hounmanou, Yaovi Mahuton Gildas, Njamkepo, E., Rauzier, J., Gallandat, K., Jeandron, A., Kamwiziku, G., Porten, K., Luquero, F., Abedi, A. A., Rumedeka, B. B., Miwanda, B., Michael, M., Okitayemba, P. W., Saidi, J. M., Piarroux, R., Weill, F. X., Dalsgaard, Anders & Quilici, M. L., 2023, In: Emerging Infectious Diseases . 29, 1, p. 149-153 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Correlation of High Seawater Temperature with Vibrio and Shewanella Infections, Denmark, 2010-2018
Hounmanou, Yaovi Mahuton Gildas, Engberg, J., Bjerre, K. D., Holt, H. M., Olesen, B., Voldstedlund, M., Dalsgaard, Anders & Ethelberg, Steen, 2023, In: Emerging Infectious Diseases. 29, 3, p. 605-608 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
How problem based teaching in amultidisciplinary continuing educationclassroom can contribute to improvingprofessional skills
Hounmanou, Yaovi Mahuton Gildas, 2023, Improving University Science Teaching and Learning: Pedagogical Projects 2023. University of Copenhagen, p. 337-346 (Improving University Science Teaching and Learning - Pedagogical Projects; No. 18).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Whole strains vs MGEs in short and longterm transmission of ESBL genes between healthcare and community settings in Uganda
Hounmanou, Yaovi Mahuton Gildas, Wanyana, A., Alafi, S., Wabwire-mangen, F., Christensen, Henrik, Olsen, John Elmerdahl & Byarugaba, D. K., 2023, In: Scientific Reports. 13, 10229.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prevalence and whole genome phylogenetic analysis reveal genetic relatedness between antibiotic resistance Salmonella in hatchlings and older chickens from farms in Nigeria
Jibril, A. H., Okeke, I. N., Dalsgaard, Anders & Olsen, John Elmerdahl, 2023, In: Poultry Science. 102, 3, 102427.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assessment of human exposure risk related to contamination of Danish sow carcasses with bile containing Salmonella
Just, M. S., Skive, Bolette, Ingmer, Hanne, Møgelmose, V., Lindegaaard, L. L. & Alban, L., 2023, In: Preventive Veterinary Medicine. 217, 105958.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mitigating antimicrobial resistance (AMR) using implementation research: a development funder's approach
Khurana, M. P., Essack, S., Zoubiane, G., Sreenivasan, N., Cordoba, G. C., Westwood, E., Dalsgaard, A., Mdegela, R. H., Mpundu, M., Scotini, R., Matondo, A. B., Mzula, A., Chanishvili, N., Gogebashvili, D., Beruashvili, M., Tsereteli, M., Sooronbaev, T., Kjærgaard, J., Bloch, J., Isaeva, E. & 12 others, , 2023, In: JAC-Antimicrobial Resistance. 5, 2, 10 p., 031.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR-Cas9 Shaped Viral Metagenomes Associated with Bacillus subtilis
Kohm, K., Lutz, Veronika Theresa, Friedrich, I. & Hertel, R., 2023, Metagenomics: Methods and Protocols. Streit, W. R. & Daniel, R. (eds.). Humana Press, p. 205-212 8 p. (Methods in Molecular Biology, Vol. 2555).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Bacteriological examination in place in five European countries to assess carcass fitness for consumption during meat inspection
Laukkanen-Ninios, R., Langkabel, N., Ghidini, S., Pikkemaat, M., Biesta-Peters, E. G., van der Ark, K. & Alban, L., 2023, In: Food Control. 153, 109946.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fluoroquinolone resistance does not facilitate phage Φ13 integration or excision in Staphylococcus aureus
Leinweber, H., Sieber, R. N., Bojer, Martin Saxtorph, Larsen, J. & Ingmer, Hanne, 2023, In: Access microbiology. 5, 6, 19 p., 000583.v4.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Clinical Staphylococcus aureus inhibits human T-cell activity through interaction with the PD-1 receptor
Mellergaard, M., Skovbakke, S. L., Jepsen, S. D., Panagiotopoulou, N., Hansen, A. B. R., Tian, W., Lund, A., Høgh, R. I., Møller, S. H., Guérillot, R., Hayes, A. S., Erikstrup, L. T., Andresen, L., Peleg, A. Y., Larsen, A. R., Stinear, T. P., Handberg, A., Erikstrup, C., Howden, B. P., Goletz, S. & 2 others, , 2023, In: mBio. 14, 5, 21 p., e01349-23.Research output: Contribution to journal › Journal article › Research › peer-review
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Use of veterinary medicines, feed additives and probiotics in four major internationally traded aquaculture species farmed in Asia
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Persistence of foodborne pathogens and their control in primary and secondary food production chains
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Faecal contamination and health aspects of processing tomatoes (Solanum lycopersicum) irrigated with wastewater treated by decentralised wastewater treatment technologies
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Porcine respiratory coronavirus genome sequences; comparisons and relationships to transmissible gastroenteritis viruses
Research output: Contribution to journal › Journal article › Research › peer-review
The ClpX chaperone and a hypermorphic FtsA variant with impaired self-interaction are mutually compensatory for coordinating Staphylococcus aureus cell division
Research output: Contribution to journal › Journal article › Research › peer-review
Agtrevirus phage AV101 recognizes four different O-antigens infecting diverse E. coli
Research output: Contribution to journal › Journal article › Research › peer-review