Co-circulation of multiple influenza a reassortants in swine harboring genes from seasonal human and swine influenza viruses

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningfagfællebedømt

Since the influenza pandemic in 2009, there has been an increased focus on swine influenza A virus (swIAV) surveillance. This paper describes the results of the surveillance of swIAV in Danish swine from 2011 to 2018. In total, 3800 submissions were received with a steady increase in swIAV positive submissions, reaching 56% in 2018. Full genome sequences were obtained from 129 swIAV positive samples. Altogether, 17 different circulating genotypes were identified including six novel reassortants harboring human seasonal IAV gene segments. The phylogenetic analysis revealed substantial genetic drift and also evidence of positive selection occurring mainly in antigenic sites of the hemagglutinin protein and confirmed the presence of a swine divergent cluster among the H lpdm09Nx (clade 1 A.3.3.2) viruses. The results provide essential data for the control of swIAV in pigs and emphasize the importance of contemporary surveillance for discovering novel swIAV strains posing a potential threat to the human population.

OriginalsprogEngelsk
Artikelnummere60940
TidsskrifteLife
Vol/bind10
Antal sider24
ISSN2050-084X
DOI
StatusUdgivet - 2021

Bibliografisk note

Funding Information:
The farmers or the medical company IDT Biologika GmbH paid the initial screening for the presence of swIAV in a submission, while the Danish Veterinary and Food Administration paid the remaining analyses. In addition, the work presented in this article was supported by Novo Nordisk Foundation (FluZooMark - grant #NNF19OC0056326).

Publisher Copyright:
© 2021, eLife Sciences Publications Ltd. All rights reserved.

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